Protein Info for HMPREF1078_RS15395 in Parabacteroides merdae CL09T00C40

Annotation: replication-associated recombination protein A

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 426 PF05496: RuvB_N" amino acids 10 to 129 (120 residues), 55.3 bits, see alignment E=2.4e-18 PF07728: AAA_5" amino acids 43 to 131 (89 residues), 26.9 bits, see alignment E=1.6e-09 PF00004: AAA" amino acids 44 to 153 (110 residues), 66.2 bits, see alignment E=1.5e-21 PF16193: AAA_assoc_2" amino acids 185 to 253 (69 residues), 85.2 bits, see alignment E=1.1e-27 PF12002: MgsA_C" amino acids 254 to 420 (167 residues), 240.1 bits, see alignment E=4.4e-75

Best Hits

KEGG orthology group: K07478, putative ATPase (inferred from 93% identity to pdi:BDI_0504)

Predicted SEED Role

"ATPase, AAA family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (426 amino acids)

>HMPREF1078_RS15395 replication-associated recombination protein A (Parabacteroides merdae CL09T00C40)
MMSQPLAERLRPKTLDDYIGQKHLVGPGAVLRKMIDAGRVPSFILWGPPGVGKTTLAQII
SNKLEAPFYTLSAISSGVKDVREVIEKAKGNRFFNTVSPILFIDEIHRFSKSQQDSLLNA
VETGVVTLIGATTENPSFEVIRPLLSRCQVYVLKSLEKADLLTLLNKAVTEDIILKDMNI
VLAETDAMLRYSGGDARKLLNILELVVAAEEGNEKIEITDEKVVERLQENPAAYDKGGEM
HYDIISAFIKSIRGSDPDAAVYWLARMVAGGEDPEFIARRLVISASEDIGLANPNALLLA
NACFDALKKIGWPEGRIILAETTVYLACSPKSNSAYMAINDALELVNRTGNLPVPLHLRN
APTKLMAELNYGKDYKYAHDYENHFVKQEFLPKEILNERLWKGQENPSEHKLIEQMRRLW
GDRYQN