Protein Info for HMPREF1078_RS15310 in Parabacteroides merdae CL09T00C40

Annotation: peptide MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 508 transmembrane" amino acids 21 to 40 (20 residues), see Phobius details amino acids 46 to 66 (21 residues), see Phobius details amino acids 74 to 92 (19 residues), see Phobius details amino acids 98 to 120 (23 residues), see Phobius details amino acids 142 to 162 (21 residues), see Phobius details amino acids 180 to 199 (20 residues), see Phobius details amino acids 236 to 253 (18 residues), see Phobius details amino acids 280 to 299 (20 residues), see Phobius details amino acids 308 to 325 (18 residues), see Phobius details amino acids 345 to 362 (18 residues), see Phobius details amino acids 374 to 396 (23 residues), see Phobius details amino acids 417 to 440 (24 residues), see Phobius details amino acids 453 to 474 (22 residues), see Phobius details amino acids 480 to 500 (21 residues), see Phobius details PF07690: MFS_1" amino acids 14 to 337 (324 residues), 58.8 bits, see alignment E=4.8e-20 PF00854: PTR2" amino acids 75 to 210 (136 residues), 87.8 bits, see alignment E=7.3e-29 amino acids 330 to 471 (142 residues), 76.7 bits, see alignment E=1.7e-25

Best Hits

KEGG orthology group: K03305, proton-dependent oligopeptide transporter, POT family (inferred from 80% identity to bsa:Bacsa_1427)

Predicted SEED Role

"Di-/tripeptide transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (508 amino acids)

>HMPREF1078_RS15310 peptide MFS transporter (Parabacteroides merdae CL09T00C40)
MFEGQPKGLYALALANTGERFGYYTMLAIFVLFLKANFGLSPGMAGTIYSTFLALVYFLP
FIGGILADKFGYGKMVTIGIIAMFAGYVLLALPLGSGTLALACMFSALLVISTGTGLFKG
NLQVMVGNLYDSPEYASKRDSAFSIFYMAINIGALFAPTAAVKIMEYAQQNLGVSVNDSY
HFAFGVACISLIISMAIYYSSRRTFKHVEGNIKQTSAGKETAKVEELSPRETKDRIIALC
LVFAVVIFFWMAFHQNGLTLTYFADEFTAKSSTGLESMMFDVWNLVAIIFIVYGLFSLFQ
SSTGKGKAISGIVILLALAFLGYRYSSLNGSVPVDAPIFQQFNPFFVVALTPVSMAIFGA
LSRKGKEPSAPRKIGLGMLVAACGFILMMFSSFGLLTPEAQSEAIQAGTASFVSPNWLIS
TYLVLTFGELLLSPMGISFVSKVAPPKYKGMMMGGWFVATAIGNYLTAVAAWIWGDMPLW
IVWGVLVGVCLVSAVFIFSVMKKLEKVA