Protein Info for HMPREF1078_RS14905 in Parabacteroides merdae CL09T00C40

Annotation: glycosyltransferase family A protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 488 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF00535: Glycos_transf_2" amino acids 246 to 379 (134 residues), 79.2 bits, see alignment E=3.5e-26 PF10111: Glyco_tranf_2_2" amino acids 246 to 349 (104 residues), 28.1 bits, see alignment E=1.4e-10

Best Hits

KEGG orthology group: None (inferred from 67% identity to bfr:BF0434)

Predicted SEED Role

"Putative glycosyltransferase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (488 amino acids)

>HMPREF1078_RS14905 glycosyltransferase family A protein (Parabacteroides merdae CL09T00C40)
MKMINCFIPFLSLPQARQTVRALGLCDRIKNIYLLATEKIPDEVEGCEMLMIDSPASTAT
FRTIALHADTAYTLLYTKYTAFEPGQFAFERLLAIAGDTNAGMLYADRYLLKNGNSQQAP
VIDYQKGSLRDDFDFGSLLFFRSSVLKQAVRAMDADYRFAGLYDLRLRVSELAELVHVNE
YLYSEVETDIRKSGEKLFDYVDPKNRAVQIEMEAVCTAYLKRVGGYLAPDFEPVTFDAGG
FEQEASVIIPVRNRIRTIEDAIRSVLAQKTTFRFNLIIVDNHSTDGTSEAIEKYTADGRV
VHLVPERSDLGIGGCWNVGVHHPACGKFAVQLDSDDVYSGPDTLQKIVDAFYEQNCAMVV
GTYRMTDFKMNEIPPGIIDHREWTLENGRNNALRINGLGAPRAFYTPVLRRINLPNTSYG
EDYALGLRISRTWRIGRIYDVLYLCRRWEDNSDAALDVVKMNGHNTYKDRIRTWELQARI
ALNAHSPK