Protein Info for HMPREF1078_RS14490 in Parabacteroides merdae CL09T00C40

Annotation: DUF4105 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 399 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 256 to 276 (21 residues), see Phobius details amino acids 286 to 308 (23 residues), see Phobius details amino acids 319 to 336 (18 residues), see Phobius details amino acids 343 to 364 (22 residues), see Phobius details amino acids 370 to 388 (19 residues), see Phobius details PF13387: DUF4105" amino acids 26 to 168 (143 residues), 84.6 bits, see alignment E=3.5e-28

Best Hits

KEGG orthology group: None (inferred from 66% identity to pdi:BDI_0486)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (399 amino acids)

>HMPREF1078_RS14490 DUF4105 domain-containing protein (Parabacteroides merdae CL09T00C40)
MKKYIFLLFLLFTAVSLQAQYPLLSKDAEISLLTVSPSEDEVYTVYGHTALRVRDASKKL
DTVFNYGIFDFSKPNFIYRFAKGETDYRLAAQYTRDFLIEYEMRGSEVTEQILDIDSAGK
ARIWEALMINNRPENRVYRYNFFFDNCATRPAAIIEKLAGGKIDYNIPFKQQTFRDLINY
CTRNKPWLTFGCDLALGSPTDRIATPHEMMFLPPYLKEAFGTASITGADGSRKELVSSTK
TLINGLTDEVKPDTGFFTPLVCCWAFFLVVLAVTFVEWRHKSYFRIIDCILFFTAGIAGI
VLFFLSFVSTHPCVCPNWNIIWLQPFDLAAVILFTVKKLRKAAYYYHFINFAALTLMLAG
WHFIPQHLNTAFIPLVMSLWLRSGYGVYRKIWNIGYEKY