Protein Info for HMPREF1078_RS14480 in Parabacteroides merdae CL09T00C40

Annotation: preprotein translocase subunit SecA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1119 PF07517: SecA_DEAD" amino acids 7 to 583 (577 residues), 373.1 bits, see alignment E=2.8e-115 PF01043: SecA_PP_bind" amino acids 408 to 539 (132 residues), 103.6 bits, see alignment E=2.9e-33 PF21090: P-loop_SecA" amino acids 598 to 699 (102 residues), 152.5 bits, see alignment E=3.7e-48 amino acids 697 to 767 (71 residues), 115.7 bits, see alignment 6.9e-37 PF00271: Helicase_C" amino acids 615 to 731 (117 residues), 23.6 bits, see alignment E=1.6e-08 PF07516: SecA_SW" amino acids 770 to 1018 (249 residues), 185 bits, see alignment E=5.2e-58 PF02810: SEC-C" amino acids 1099 to 1116 (18 residues), 39.1 bits, see alignment (E = 1.6e-13)

Best Hits

Swiss-Prot: 90% identical to SECA_PARD8: Protein translocase subunit SecA (secA) from Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / CIP 104284 / JCM 5825 / NCTC 11152)

KEGG orthology group: K03070, preprotein translocase subunit SecA (inferred from 75% identity to bfr:BF1068)

Predicted SEED Role

"Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1)" (TC 3.A.5.1.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1119 amino acids)

>HMPREF1078_RS14480 preprotein translocase subunit SecA (Parabacteroides merdae CL09T00C40)
MGFNEFMTKLFGNKSQRDLKEITPYVDKIKAVYPSIQKLSNDELRAKTDEIKQRIQDYVA
DERAKVEELRKGIDNKELEEREAIWAEVDKIEKNITEKMEVVLEEVLPEVFSIMKDTARR
FSENETIEVTANDFDRNLATKYDFVEINGDKAIYHNHWVAGGNEITWDMVHYDVQLFGGV
VLHKGKIAEMATGEGKTLVATLPVFLNALTRNGVHVVTVNDYLSKRDSEWMGPLYMFHGL
SVDCIDKHQPNSDARRAAYNADITFGTNNEFGFDYLRDNMAISPNDLVQRKHNYAIVDEV
DSVLIDDARTPLIISGPIPRGEEQLFEQFRPNVEVVVNAQKDLCSKMLIEAKKKMASSDQ
KEVEEGSIQLYRSFKGYPRNKALIKFLSEQGVKAQMLKTEEYFMSENMRHMHEATDELYF
VIDEKNNSIELTDKGIDLLTGKTDDPTFFVLPDITSQLSELEHIQNEEEKQAKKDELLAN
YSVKSERVHTINQLLKAYTLFEKDDEYVVMDNKVMIVDEQTGRIMDGRRYSDGLHQAIEA
KERVKVEAATQTFATITLQNYFRMYHKLSGMTGTAETEAGEFWDIYKLDVVVIPTNRPIA
RNDMNDRIYKTKREKYNAVIEEIVRLTEAGRPVLVGTTSVEISELLSRMLTMRKIKHNVL
NAKLHQKEAEIVATAGQSSTVTIATNMAGRGTDIKLSQEVKAAGGLAIIGTERHESRRVD
RQLRGRAGRQGDPGSSVFFVSLEDDLMRLFASEKIAGLMDKLGFKEGEVLEHSMLSKSVE
RAQKKVEENNFGIRKRLLEYDDVMNSQRNVIYTRRRHALMGERIGLDVLNTIYDTSVAIV
DQHADGDYEGFKLELFKTFAMECPFTEEEFKNGKADKLADKLFDEALQLFKRRMERMTQV
ANPVIKQVYEHQGAMYENIMIPITDGKRMYNVSCNLKEAYETESKAITKAFQKSIVLHTI
DEAWKEHLREMDELRHSVQNASYENKDPLLIYKLESYNLFKNMVDMMNRKTAAVLMRGQI
PVREEPTEEEKQAMAARQAAMEEAARQRIAIQRAEAERHQDMSKYRTEKTDISGNNNPEE
RAQQQPRQEPVRAEKRVGRNDPCPCGSGKKYKNCHGQGL