Protein Info for HMPREF1078_RS13790 in Parabacteroides merdae CL09T00C40
Annotation: AAA family ATPase
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: None (inferred from 81% identity to bfr:BF1154)Predicted SEED Role
"DNA sulfur modification protein DndD"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (666 amino acids)
>HMPREF1078_RS13790 AAA family ATPase (Parabacteroides merdae CL09T00C40) MLIQRIKISNYKTYLSLDLDLTVDDDRPIILIGGANGGGKTTLFEAISGALYGLKIENKE HFMELLNQGALNTAKPEISLQITFVGKVLGQQQKYILKRVYQLNPQGKPLESVSLNMNGN MYVYGTMTAPKDRVKAEQEINKIIKANLPQELSQYFLFDAMQSSELLKKNVFAQTIRDNF ENVLGFKKYLQLKRAAEKLQQEWAQQRLEAEKEAQEYNELCAQKDKLTADLNTCIAEQDT KYKYLASVEVEYKRAKDGAQEASALNKKIQELASKIDDIVKRAATYAEDLKAFVDNIEID LFLPKLASNLAQEINNILHIKEQLQKENTGAYPLETLKDVTNKIITYLKDLSLCSESVDE EQVVSHIVAIQNSTNKEDPFGYLDETEVTALSNLVKRTGSNQFIALDRQRQELEIQLSTL DNLRSQKQTLEQTQAGGNEYLIQNYEAAQKQIEKLKGQEATLKADIQRLEKRIHQFDVQI QQEPDIKFDTLVKLKPLFEKIADSLLKKKKAQIESEMQQQLNKLLVSYKGHVTKVELSDS IEQFNIKLYHTAGNEISLNQLNAASKQIFIQVLLKVLRNLGDYNPPVMIDTVMGVLDNES RDALMEEYFPQLAEQTILLCTTSEIRTDSDYIKLEPFISQTYTLHRNVEAQNTTVEDGYF GLTLNQ