Protein Info for HMPREF1078_RS13370 in Parabacteroides merdae CL09T00C40

Annotation: RNase adapter RapZ

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 476 PF01636: APH" amino acids 20 to 253 (234 residues), 50.8 bits, see alignment E=2.1e-17 PF03668: ATP_bind_2" amino acids 329 to 465 (137 residues), 78 bits, see alignment E=7.9e-26

Best Hits

KEGG orthology group: None (inferred from 82% identity to pdi:BDI_3808)

Predicted SEED Role

"COG3178: Predicted phosphotransferase related to Ser/Thr protein kinases" in subsystem YjeE

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (476 amino acids)

>HMPREF1078_RS13370 RNase adapter RapZ (Parabacteroides merdae CL09T00C40)
MITEELKQLYQTHTGSPATDITELSSSGSNRRYFRLSGSVSLIGVSGTSIEENNAFIYMA
AHFREKRLPVPQVYCWSVDKSFYLQEDLGDTLLFQAIEKGRKSCFFDETEKSLLHKTITL
LPTLQFKGAEGFDFSQCYPLPEFNRRSILWDLNYFKYCFLKATGMEFQENLLEDDFQKMS
DVLLQDHTPTFMYRDFQSRNVMVKNGEPWFIDFQGGRKGPIYYDVASFLWQAKAKYPAEL
RQELIADYLQALRGYMDIDEKHFFRQLRHFVLFRTLQVLGAYGFRGYFEKKPHFIQSVPF
AIDNLRQLLKEDYPEYPYLCTVLRELTNLSQFYDDIQKHTLKVKIVSFAYKKGIPNDPSG
NGGGFVFDCRAINNPGKYERYNHFTGLDEPVIRFLEEDGEITRFLDHAYEIVDASVKRYM
DRGFTNLMICFGCTGGQHRSVYSAQHMAEHIHSKFGVRVDLVHREQNIEQLFNSIL