Protein Info for HMPREF1078_RS12870 in Parabacteroides merdae CL09T00C40

Annotation: lysine exporter LysO family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 208 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details transmembrane" amino acids 34 to 50 (17 residues), see Phobius details amino acids 65 to 85 (21 residues), see Phobius details amino acids 90 to 112 (23 residues), see Phobius details amino acids 124 to 149 (26 residues), see Phobius details amino acids 183 to 206 (24 residues), see Phobius details PF03956: Lys_export" amino acids 8 to 206 (199 residues), 237.5 bits, see alignment E=4.5e-75

Best Hits

KEGG orthology group: None (inferred from 88% identity to pdi:BDI_2727)

Predicted SEED Role

"putative surface protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (208 amino acids)

>HMPREF1078_RS12870 lysine exporter LysO family protein (Parabacteroides merdae CL09T00C40)
MKGSLIVVGFFALGCLLGWSGWLPDVVIENDITVYVLYLLMFQVGLSIGSDKKLKDILGS
IRPKLLLVPLATIAGTLVFSALVGLLLTQWSVFDCLAVGSGFAYYSLSSILITQLKEPFL
GVQLATELGTIALMANIMREIMALLGAPLFVKYFGRLSPICAGGATTMDTTLPVITRYSG
KDLVFISIFHGIIVDFTVPFFVSFFCSF