Protein Info for HMPREF1078_RS12175 in Parabacteroides merdae CL09T00C40

Annotation: redoxin domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 360 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF14289: DUF4369" amino acids 26 to 113 (88 residues), 62.6 bits, see alignment E=1.5e-20 PF08534: Redoxin" amino acids 225 to 349 (125 residues), 72.3 bits, see alignment E=1.4e-23 PF00578: AhpC-TSA" amino acids 225 to 343 (119 residues), 89.5 bits, see alignment E=5.9e-29 PF13905: Thioredoxin_8" amino acids 251 to 341 (91 residues), 49.8 bits, see alignment E=1.3e-16

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (360 amino acids)

>HMPREF1078_RS12175 redoxin domain-containing protein (Parabacteroides merdae CL09T00C40)
MNTKTLIALLMAGAGLASCSQPIPSYTVMGNIPDSTFNGKTVYIFDRDKGQNIDSAVIEN
GAFTFTGQIDTAVLCLTQVGRKYYTTFMLENGTIQLNMETPNSASGTPLNETFSSYIQEE
KRISELFQNKMKEIREQEQDKSKVQELTKTYYDNEYKPAYMAMLKDFIDKNQDNYIGAFA
LQNLSNFMNPEEMESIIAQSSAFIQSRNIIRKLSQRITNLKKTAVGQPFTDFTVETEDGK
KVSLSDYVGKGNYVLVDFWASWCGPCRAETPILAEVYNQYKDKGFQVLGVATWDQPKDTK
KAIEDLKITWPQILNAQNTPSELYGFNGIPHIILFGPDGTIVARDLRGDALKAKVKEMMQ