Protein Info for HMPREF1078_RS11825 in Parabacteroides merdae CL09T00C40

Annotation: SufE family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 142 PF02657: SufE" amino acids 11 to 130 (120 residues), 163.2 bits, see alignment E=1.1e-52

Best Hits

Swiss-Prot: 43% identical to SUFE_PECCP: Cysteine desulfuration protein SufE (sufE) from Pectobacterium carotovorum subsp. carotovorum (strain PC1)

KEGG orthology group: K02426, cysteine desulfuration protein SufE (inferred from 89% identity to pdi:BDI_3546)

MetaCyc: 37% identical to sulfur carrier protein SufE (Escherichia coli K-12 substr. MG1655)
RXN0-7443

Predicted SEED Role

"Sulfur acceptor protein SufE for iron-sulfur cluster assembly"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (142 amino acids)

>HMPREF1078_RS11825 SufE family protein (Parabacteroides merdae CL09T00C40)
MTINELQNNVIEEFADFDDWMDKYALLIDLGNSLPPLEEKYKTESNLIEGCQSRVWLQAD
YVDGKILFKGESDAVIVKGIVSLLISILSDHTPQEILDADLYFIEKIGLKEHLSPTRSNG
LVAMVKQMRMYALAFRTKEQQG