Protein Info for HMPREF1078_RS10725 in Parabacteroides merdae CL09T00C40

Annotation: DUF6383 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 417 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF19910: DUF6383" amino acids 342 to 415 (74 residues), 26.4 bits, see alignment E=6.1e-10

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (417 amino acids)

>HMPREF1078_RS10725 DUF6383 domain-containing protein (Parabacteroides merdae CL09T00C40)
MVNKLYFYCLALFVAPTFSAFGQTQPSQDENGYYLIESAEHLKWFRDQVNASEHEQVDTN
GDGQINMDDDTVVRLNAKLTADIDLGGESWTPIGEYNNGEEPDEVRFGGYFDGQGHVIKG
LNVQPIDGRQSYGLFGYVAWGVVKNLGIVGGTVTSKADDGQEYTGAISGMLSYGRIENCF
STATVSGTAEGSIGGLTGGMRKISSVSNSYNAGTVINPAGMAGGITGYIGSDASVYNCYN
MGKVTGGAISGDDYSESTLRSGEEELPSIIDCYYLEGAGSGTLAKALSASDFVTTINEKL
FTDPNNGEDFPWDGKANLAGDRLSVPTFDSSSVVEVPLDDDPTAMETIAKGESHIQAIDG
RICITTSEPMKVRVVNIAGQTVRTVSLSDGYSEMTGLAEGVYIVVLEDGTCVKVLLR