Protein Info for HMPREF1078_RS10695 in Parabacteroides merdae CL09T00C40

Annotation: glycosyltransferase family 2 protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 354 PF13641: Glyco_tranf_2_3" amino acids 17 to 243 (227 residues), 56.3 bits, see alignment E=9e-19 PF00535: Glycos_transf_2" amino acids 22 to 143 (122 residues), 62.2 bits, see alignment E=1.2e-20 PF10111: Glyco_tranf_2_2" amino acids 49 to 257 (209 residues), 29.8 bits, see alignment E=8.8e-11 PF13632: Glyco_trans_2_3" amino acids 100 to 243 (144 residues), 30.7 bits, see alignment E=5.9e-11

Best Hits

KEGG orthology group: K07011, (no description) (inferred from 80% identity to pdi:BDI_0046)

Predicted SEED Role

"Glycosyltransferase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (354 amino acids)

>HMPREF1078_RS10695 glycosyltransferase family 2 protein (Parabacteroides merdae CL09T00C40)
MKTNENFQLSTFNFQPDKRLAVVILNWNGRALMEEFLPSVVACTPGEWADVIVADNGSTD
DSIEMLKTKFPTVGIIRLDKNYGFAEGYNQALKHIGHEYTVLLNSDVEVTPGWLDAPIAA
LDADKTIAGVQPKIRAQRNKEYFEYAGAAGGYMDRYGYPYCRGRVLHVVEKDAGQYDTPA
DLLWATGACLFVRTATYKEVGGLDAGFFAHQEEIDLCWRLRSRGYRLVCTPSSVVYHVGG
ATLNVESPRKTFLNFRNNLLMLYKNLPEKDLKHVMHARFWLDYIAAAKFLLTGHYPNARA
VYEARKAFHELKPSYEPVRRENLAKTKLSGIPELRKGSLILAFYLQGKKRFTEL