Protein Info for HMPREF1078_RS10465 in Parabacteroides merdae CL09T00C40

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 404 transmembrane" amino acids 9 to 26 (18 residues), see Phobius details amino acids 32 to 50 (19 residues), see Phobius details amino acids 57 to 78 (22 residues), see Phobius details amino acids 84 to 105 (22 residues), see Phobius details amino acids 117 to 138 (22 residues), see Phobius details amino acids 150 to 168 (19 residues), see Phobius details amino acids 180 to 209 (30 residues), see Phobius details amino acids 216 to 235 (20 residues), see Phobius details amino acids 267 to 287 (21 residues), see Phobius details amino acids 320 to 340 (21 residues), see Phobius details amino acids 352 to 370 (19 residues), see Phobius details amino acids 376 to 393 (18 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 57% identity to pdi:BDI_1468)

Predicted SEED Role

"Oligosaccharide repeat unit polymerase Wzy" in subsystem KDO2-Lipid A biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (404 amino acids)

>HMPREF1078_RS10465 hypothetical protein (Parabacteroides merdae CL09T00C40)
MIQDFINKQFFSLFVFTLIFGLLLYGTIGFDFIDEICATLLFILFGYSLFKSQEWLINKA
FLTTIGVFLFYLCYSLCINSNTKAAIITDFIIQFKPYLALFCVYSLRPHFSTNQKKILRI
ICVFFWLILLILACIEIFKPHTLSNVMAHATYFAAGVIATSLCFLYTGDFSMKDRILFII
MLSIGLISGRSKFYGFFTLSVMVIIYFSNINHFKLNIKTIILLIITLILILVVSWKKVSF
YFIEGITGEAETDTIARFVLYTTSIQILIDYFPFGCGFGSFATYASGLYYSHIYNQYGIE
NVWGISKSFYSFIADTYYPSLAQFGFVGIMLYITFWIYVFKKALIFFQHTKQAKLMIIVL
LLICFFGIEGTSDSTITTHRGLFMMMMIGLMLSEMKNKIANSKS