Protein Info for HMPREF1078_RS10160 in Parabacteroides merdae CL09T00C40

Annotation: OmpA family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 662 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF07676: PD40" amino acids 226 to 249 (24 residues), 23.2 bits, see alignment (E = 5.3e-09) amino acids 291 to 317 (27 residues), 25.9 bits, see alignment (E = 7.3e-10) amino acids 332 to 369 (38 residues), 13.5 bits, see alignment 5.8e-06 PF00691: OmpA" amino acids 526 to 613 (88 residues), 73 bits, see alignment E=2.1e-24

Best Hits

KEGG orthology group: K03640, peptidoglycan-associated lipoprotein (inferred from 83% identity to pdi:BDI_3758)

Predicted SEED Role

"Outer membrane lipoprotein omp16 precursor" in subsystem Ton and Tol transport systems

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (662 amino acids)

>HMPREF1078_RS10160 OmpA family protein (Parabacteroides merdae CL09T00C40)
MRQFTPYLFLLLAASFLYSCKSAKLSDAEEKQRIGEYFEAAAIYRKVYTKTPPAKRDLRG
YIAFRMAECNRLINNTPRATSAYMNALRYKYPDSIVNLRLGQMYQKSGRYGEAVKYYNDY
LLAEPGSVLAFNGVTGCEEAVKWKQSPTRYTVKRMDKFNSRRSEFSPMLYGEKYDQLYFA
STRAPKGAGKDKEETNSAITGQRNNDLFLVKQDENGAWLAPVELEDEVNTEFDEGTPSFS
KDGNTMYYTYCAQDPEGPRTSEIYISSRSSAKWGKGTRANIVKDSVTALGHPSISPDGKY
LYFVSDAVGGYGGKDLFRARVVGSDFGSMENLGPDINTPGDEMFPYVRDSVTLYFASDGH
PGMGGLDIFKATLDSTGKWNVENMKAPINSSGDDFGITFAGNKESGFFSSNRNDARGYDH
LYSFELPVITIFIEGIVSDVDENPIEDATVRIVGRDGLNEKVLAKKDGKYRVELERDIRY
VMMASARGYLNQNFELKTGPEEKNETYIVDFFLSPISKPVVIENIFYDFDKATLRPESKK
ALDEMIKILNDNPNVTIELGAHTDRKGSEQYNERLAQRRAQSVVDYLIAGGIAQDRLEAK
GYGESVPKAINKRMAKNYDFLNEGDVLTEEFIERMTPEQQEIADQINRRTEFKVLRTNYN
LF