Protein Info for HMPREF1078_RS09775 in Parabacteroides merdae CL09T00C40

Annotation: translocation/assembly module TamB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1531 transmembrane" amino acids 27 to 47 (21 residues), see Phobius details PF04357: TamB" amino acids 1051 to 1486 (436 residues), 202.3 bits, see alignment E=7.4e-64

Best Hits

Predicted SEED Role

"FIG00898933: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1531 amino acids)

>HMPREF1078_RS09775 translocation/assembly module TamB (Parabacteroides merdae CL09T00C40)
MQINEIYRDIVVVLCLNYSKDIKGLKYIIVTLLTLFWIFYATPAILLRIPYVQQKVATTA
TRELSERLGVPVRIGNVDIEWFNRLVLENLYLEDESGTVLFDANHVSAGFEILPLLNGRI
VFSTVRLFGFSVNLHKETPADKLNLQFVIDAFASKDTVKKQSNIDLRFNSILIRRGNFRY
DVKNAATTPGKFNAKHIDIRNISAKISMKAFNKDSLNANIKKMSFDEASGFSLNKLSLNI
VANKDSAIINNFEIKLPETDLKIDRAHIHTGEAVSASDLLDHSPVELNIAPSQICLKDLS
AFVPAFRNFSETIELSAEASGYINNIGLKRLTLKYSDKMLFVGKMEMKGITHPEDAYIFG
QVNKMYITTEGISGLANNFNERPVKLPDAIVKLGTINFTGEISGFFDNLVAFGKFSSAIG
SVQTDLIFGNDKEKNIAAYLKGHLSTSPLHLNELFPDGNPYGTAKLAVTLDTHRPANGSF
SGNIKANIDEFEYKGYKYENILLSGNFQKNGFNGVLDINDPNGKLYAEGLFLHEGKNSMF
NFTSRLEHFHPDSLHLTNKYEAPDISCTLNADFTGNNIDNLEGSITLDSLSFKTKPDSFF
LKKFKVEATGHSLDRHLAITSDVLNGEVTGAYSFTTIVPSLMQTLKGYIPALINVTQKKQ
KVMENNFSLLLTIENTEAISNTLKLPFTMLTQGRITGHYNNLYNRFRFEAYLPKFNIGKS
MFESGYLTCDNPEDRVNLKLKATNYNAKGLRNYMDLKADAKDNRIQTQISWANNKERLFK
ADLSASTLFIEEEQEKGPAKLRTEISLNESPLILNDSTWHIAPSTITIADGKIGIQDFSV
SNGTEYLHMEGTVSKDPADTLLLDLKQVELSYIFDILNIPVLQFAGKATGTFNITDLYGS
RMLNTDLEVQNFSFNQVQLGRLNLFSEWDDQQKGILMLGSIYKNDTTWTDVSGYVYPVGK
NAGLSLFFGANDLNLAFLHPFVENIAKNMQGRGFGNIHLHGPFKALNVEGDAFVLDGGLG
IEYLNTYYTFSDSIHLTPGAIIGRNVTVHDKFGNSAKVNLTVNHKHFKDVSFDVGVQTNN
MLVFDAPQKQNPLIFGTVFGTGTASIKGNGQLINFDINMRSDPKTSVKLDFMNNSSAAEY
DFITFVNKKELREMALTKPVDSIKPLIFKNEDEGAELRMNFLLDITPDADIELIMDPVAG
DKITGNCNGSLQIQYGTKTDLRMYGNIGIVQGNYNFSLQQLIHKNFKIRDGSIINFRGDP
FEATMNVNAIYNVTANIQDLDPSLTYESSRRNTPVNCVLKLDGVLRNPTISFDLELPSSN
EELQRQVKSLVDTEDMMTRQIIYLLVLNKFYTPEYNAQYKSNDFSAVASSALSSQISSIM
NSFTDKVQLGTNIRTSQDGIEDTEVEMLLSSQLLNNRLIFNGNFGYKNSTINNQKNAFIG
EFDLEYLLTPSGDIRLKAYNHANDMYMILKQALTTQGVGIMYKKDFTRFSDIFRRRKKYP
LIPLRPTVPDSTQQTPVTTEQIPTATEHTKK