Protein Info for HMPREF1078_RS09335 in Parabacteroides merdae CL09T00C40

Annotation: conjugative transposon protein TraM

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 441 transmembrane" amino acids 29 to 46 (18 residues), see Phobius details TIGR03779: Bacteroides conjugative transposon TraM protein" amino acids 22 to 441 (420 residues), 497.1 bits, see alignment E=2.5e-153 PF12508: Transposon_TraM" amino acids 241 to 433 (193 residues), 256.6 bits, see alignment E=7.2e-81

Best Hits

Predicted SEED Role

"Conjugative transposon protein TraM" in subsystem Conjugative transposon, Bacteroidales

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (441 amino acids)

>HMPREF1078_RS09335 conjugative transposon protein TraM (Parabacteroides merdae CL09T00C40)
METKKEQKNETKEKKPLTEEQRQLRRKMLVYPLMGLTFLGCMWLIFSPSQEDRNKERQGQ
GFNTDMPQPEDSKIIGDKAKAYEQQQLENRKKERRGMVGDLSAFWNDKTEGTDTADGTDD
CRLAQPETSPKTDGSGIQTGIRSSAAANERLNTSLGTFYEPPKEDAEKKELRQRIDELER
MVMEQEKQPARMEEQVALLEKSYELAAKYQNGGNNAGQTARTDGTEITESNAGEKKMKAE
PVSGVRPSTVSALPQPLTDSAFIADYGGERNYGFHTAIGSTEAPGKNTIAACVQGDQTVT
DGQTVRLRLLEPMRVSGRTIPRNTTLVGTARLQGERLEIGIGSLEHEGTIVGVELAVYDS
DGQAGIFVPGSMETDAAKEIGANMGSSLGSSINISTDAGAQLASDLGKGVIQGVSQYISK
RMRTVRVHLKSGYRVLLYQEK