Protein Info for HMPREF1078_RS08985 in Parabacteroides merdae CL09T00C40

Annotation: conjugal transfer protein MobC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 672 transmembrane" amino acids 20 to 41 (22 residues), see Phobius details amino acids 61 to 81 (21 residues), see Phobius details amino acids 93 to 114 (22 residues), see Phobius details amino acids 125 to 145 (21 residues), see Phobius details amino acids 314 to 331 (18 residues), see Phobius details PF14293: YWFCY" amino acids 6 to 150 (145 residues), 164.7 bits, see alignment E=2.8e-52 PF02534: T4SS-DNA_transf" amino acids 163 to 573 (411 residues), 51 bits, see alignment E=2.3e-17 PF10412: TrwB_AAD_bind" amino acids 457 to 559 (103 residues), 30.4 bits, see alignment E=3.9e-11 PF12696: TraG-D_C" amino acids 462 to 573 (112 residues), 54.2 bits, see alignment E=2.9e-18

Best Hits

KEGG orthology group: None (inferred from 100% identity to bfr:BF0133)

Predicted SEED Role

"Putative mobilization protein BF0133" in subsystem Conjugative transposon, Bacteroidales

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (672 amino acids)

>HMPREF1078_RS08985 conjugal transfer protein MobC (Parabacteroides merdae CL09T00C40)
MSQQEDDLRALAKIMDFLRAVSIILVVMNVYWFCYEAIRLWGVNIGVVDKILLNFDRTAG
LFHSILYTKLFSVLLLALSCLGTKGVKGEKITWGRIWTAFAVGFVLFFLNWWLLPLPLPL
EAVTGLYVLTIGTGYVCLLMGGLWMSRLLKHNLMEDVFNNENESFMQETRLIESEYSVNL
PTRFYYRKRWNNGWINVVNPFRASIVLGTPGSGKSYAVVNNFIKQQIEKGFSQYIYDFKY
PDLSTIAYNHLLNHPDGYKVKPKFYVINFDDPRRSHRCNPIHPDFMEDITDAYESAYTIM
LNLNKTWVQKQGDFFVESPIILFASIIWYLKIYQNGKFCTFPHAIEFLNRRYEDIFPILT
SYPELENYLSPFMDAWLGGAAEQLMGQIASAKIPLSRMISPQLYWVMSDSEFTLDINNPE
EPKILCVGNNPDRQNIYGAALGLYNSRIVKLINKKGMLKSSVIIDELPTIYFKGLDNLIA
TARSNKVAVCLGFQDFSQLVRDYGDKEAKVVMNTVGNIFSGQVVGETAKTLSERFGKVLQ
KRQSISINRQDVSTSINTQMDALIPPSKISGLTQGMFVGSVSDNFNERIEQKIFHCEIVV
DAEKVKREESAYKKIPVITNFTDEDGNDRMKETVQANYRRIKEEVKQIVQEELERIKNDP
VLCKLLPDNETV