Protein Info for HMPREF1078_RS08505 in Parabacteroides merdae CL09T00C40

Annotation: glycosyltransferase family 39 protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 572 signal peptide" amino acids 1 to 18 (18 residues), see Phobius details transmembrane" amino acids 77 to 96 (20 residues), see Phobius details amino acids 126 to 143 (18 residues), see Phobius details amino acids 156 to 186 (31 residues), see Phobius details amino acids 195 to 216 (22 residues), see Phobius details amino acids 256 to 280 (25 residues), see Phobius details amino acids 308 to 324 (17 residues), see Phobius details amino acids 330 to 349 (20 residues), see Phobius details amino acids 361 to 384 (24 residues), see Phobius details amino acids 410 to 432 (23 residues), see Phobius details amino acids 443 to 463 (21 residues), see Phobius details PF13231: PMT_2" amino acids 53 to 214 (162 residues), 34.5 bits, see alignment E=1.3e-12

Best Hits

KEGG orthology group: None (inferred from 76% identity to pdi:BDI_0921)

Predicted SEED Role

"Polymyxin resistance protein ArnT, undecaprenyl phosphate-alpha-L-Ara4N transferase; Melittin resistance protein PqaB"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (572 amino acids)

>HMPREF1078_RS08505 glycosyltransferase family 39 protein (Parabacteroides merdae CL09T00C40)
MVIVICIISVLPWIGLGDFSTKGEPREAAVAVSMLETGNWVLPQVYANEFAYKPPLAHWL
MAAASLPQGYVSEFTSRLPSALAFIILIGFTLVFFGKRLRFQQAFIATLLLITCIEIHRA
AMTTRVDMLLTTFIVIGLYQLYRWEDKLELKGVPIAIPALLGCAVLTKGPVGIILPLFVF
GVYLLMLRKYSYLVIFKALLYAGISSIFLPLLWYVAAWKQGGDTFLNVVLAENFGRFFHL
STPDIHYNLGHENGVWYNFMTLAAGFVPWTIFFFFSLFGLKLHKPEKSVKEILANTWNNI
RSMEKEKLFSLVALVCIIFFYSIPSSKRSVYLMPAYPFIAIFLAQYTLYITEYRTKVTRV
FAAFMASITAVVMIAVALTMAGAIDPVKIASQYTSHQSTLEMVELVSNMFAYPCGLTICI
LIVLLAILATVYYQMFKKINIKILYATIALAFAINLLIDGVVMRGIRQGSSARPFAKQVQ
KEYPLDDMNMYVMNDLKTYANLYGLNFYLGNKFHNFGQEQPVSGFFFCTVKDLETVQKNY
GDKYTFSLLTSTKNVIADVRQRIVLCSFLRNE