Protein Info for HMPREF1078_RS07700 in Parabacteroides merdae CL09T00C40

Annotation: chloride channel protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 602 transmembrane" amino acids 31 to 54 (24 residues), see Phobius details amino acids 73 to 93 (21 residues), see Phobius details amino acids 120 to 145 (26 residues), see Phobius details amino acids 165 to 192 (28 residues), see Phobius details amino acids 203 to 221 (19 residues), see Phobius details amino acids 241 to 259 (19 residues), see Phobius details amino acids 279 to 297 (19 residues), see Phobius details amino acids 327 to 345 (19 residues), see Phobius details amino acids 357 to 379 (23 residues), see Phobius details amino acids 391 to 415 (25 residues), see Phobius details amino acids 421 to 442 (22 residues), see Phobius details PF00654: Voltage_CLC" amino acids 81 to 437 (357 residues), 262.4 bits, see alignment E=6.8e-82 PF00571: CBS" amino acids 475 to 525 (51 residues), 25.4 bits, see alignment 1.5e-09 amino acids 537 to 589 (53 residues), 25.9 bits, see alignment 1e-09

Best Hits

KEGG orthology group: K03281, chloride channel protein, CIC family (inferred from 88% identity to pdi:BDI_1743)

Predicted SEED Role

"Chloride channel protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (602 amino acids)

>HMPREF1078_RS07700 chloride channel protein (Parabacteroides merdae CL09T00C40)
MKDNFQFSIFNFQLFYRFLLWRDKHIKEKHFILIVSFLVGICTAAAAIVLKSIIHFIQHL
LTGNFNQDGANYLYLLYPVIGILLAGLFVKYIVRDDISHGVTKILYAISQRKSRIKPHNA
WTSIVASSVTIGFGGSVGAEAPIVLTGAAIGSNLGRLFRMEQKTLMLLVGCGAAGAIAGI
FKAPIAGVVFVVEVLLLDLTMTSVLPLLITSVTAATVSYIFTGTEAMFPFSQTEAFVIER
IPYVLLLGVFCGLVSLYFTKVMNRVEGMYRNLNNYWKKFVVGGIMLSVLIFIFPPLYGEG
YDTISSLLNGQFSHIMDKSMFYSLNDTYWGLQIFLTLILLFKVFASSATNAGGGCGGIFA
PSLYLGCIAGFVFAHASNYFPFTMYLSEKNFALLGMAGIMSGVMHAPLTGVFLIAELTGG
YALFLPLMIVSVSSYITIKMFLPHSIYSMRLAQKGELLTHHKDRAVLTLLNTDSVIERDF
LTVSPEMSLGDMVKVIAKSGRNMFPVIDERGILLGLVLLDNIRNIMFRPELYNRFHVSKF
MVSAPAKIQVGTPMEQIMRIFDDTKAWNLPVVDEEGRYIGFMSKSKIFNSYREVLVENFS
GD