Protein Info for HMPREF1078_RS07245 in Parabacteroides merdae CL09T00C40

Annotation: YifB family Mg chelatase-like AAA ATPase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 512 TIGR00368: Mg chelatase-like protein" amino acids 6 to 503 (498 residues), 649.7 bits, see alignment E=1.4e-199 PF13541: ChlI" amino acids 20 to 141 (122 residues), 155.9 bits, see alignment E=1.4e-49 PF05362: Lon_C" amino acids 53 to 164 (112 residues), 23.9 bits, see alignment E=1e-08 PF01078: Mg_chelatase" amino acids 193 to 398 (206 residues), 325.4 bits, see alignment E=4.3e-101 PF00493: MCM" amino acids 209 to 359 (151 residues), 28.1 bits, see alignment E=3.7e-10 PF07728: AAA_5" amino acids 216 to 353 (138 residues), 44.6 bits, see alignment E=5.1e-15 PF13335: Mg_chelatase_C" amino acids 407 to 503 (97 residues), 110.1 bits, see alignment E=2.4e-35

Best Hits

KEGG orthology group: K07391, magnesium chelatase family protein (inferred from 84% identity to pdi:BDI_2803)

Predicted SEED Role

"MG(2+) CHELATASE FAMILY PROTEIN / ComM-related protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (512 amino acids)

>HMPREF1078_RS07245 YifB family Mg chelatase-like AAA ATPase (Parabacteroides merdae CL09T00C40)
MLVKSYAAAVQGISATVVTIEVNCTKGIQFFLVGLPDVAVRESHERIISALQVSGYKFPR
NRIVINMAPADIRKEGSSYDLPLAIGILAAAEELDASRLGHYMMMGELSLDGSLKSVKGI
LPIAIKAREEGFKGFIVPKQNAREAAVVNDLDVYGVSTIKEVIEFIAGRRDLEPTVVNTR
EEFYARQLQFEADFSDVRGQENVKRALEVAAAGSHNLILIGPPGSGKSMLAKRLPSILPP
FTLQESLETTKIHSVAGKIGLDTSLMTQRPFRSPHHTISNVAMVGGGAFPQPGEISLAHN
GILFLDELPEFNRSVLEVMRQPLEDRTITVSRARLSVDYPANFMLVASMNPCPCGYYNHP
DRPCLCSPGAVQKYMNRVSGPLLDRIDIQVEVVPVPFEKISDGRPSECSEAIRERVMKAR
AIQEKRFAAHEGIYSNAQMTSKLLHEYAVPDAAGLSLLKVAMQRLNLSARAYDRILKVSR
TIADLEASPNIEARHLAEAIQYRSLDRETWGT