Protein Info for HMPREF1078_RS07065 in Parabacteroides merdae CL09T00C40

Annotation: GH3 auxin-responsive promoter family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 504 PF03321: GH3" amino acids 16 to 270 (255 residues), 202.9 bits, see alignment E=1.1e-63 PF23571: GH3_M" amino acids 296 to 363 (68 residues), 76.3 bits, see alignment E=2.5e-25 PF23572: GH3_C" amino acids 381 to 492 (112 residues), 105.8 bits, see alignment E=3.5e-34

Best Hits

KEGG orthology group: None (inferred from 84% identity to pdi:BDI_2831)

Predicted SEED Role

"putative auxin-regulated protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (504 amino acids)

>HMPREF1078_RS07065 GH3 auxin-responsive promoter family protein (Parabacteroides merdae CL09T00C40)
MDILTNTISLLFRPRQKEIARFAQDADAIQHKQLKSLLSTARNTEWGLKYDYKSIQGYAD
FCERIPLQTYDDIKPYVTRMINGERNILWPSVVRWYAKSSGTTNDKSKFLPVTPEILKGC
HYKGGFDTVSIYLQNNPDSHFFASKGLILGGSHSPSPLNRNAHCGDLSAVLLQNLNPLVN
LIRVPDKKIILMDEWESKIKAIVESTWKTDVNSLSGVPSWMLVLIKAVLQKTGSEYLTDV
WPNMEVFFHGGISFEPYRDQYKALIPSDRMHYMETYNASEGFFGLQDNPEEHSLLLMIDY
SVFYEFIPINEVGEEHPTVLPLEAVEVGKNYAMVITTSGGLWRYQIGDTVRFTSLYPHKF
VISGRTKNFINAFGEELMVDNADKAISRVCRQTGAKVKEYTAAPLFMLDKAKGRHQWMIE
FEKMPPSLDDFASLLDKTLQQLNSDYEAKRYKEISLQPLEIRVAREGTFYEWLRRKGKLG
GQHKIPRLSNDRTFIEELGKICDL