Protein Info for HMPREF1078_RS06740 in Parabacteroides merdae CL09T00C40

Annotation: DUF4271 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 242 transmembrane" amino acids 21 to 40 (20 residues), see Phobius details amino acids 75 to 97 (23 residues), see Phobius details amino acids 103 to 121 (19 residues), see Phobius details amino acids 148 to 168 (21 residues), see Phobius details amino acids 174 to 193 (20 residues), see Phobius details amino acids 205 to 225 (21 residues), see Phobius details PF14093: DUF4271" amino acids 22 to 227 (206 residues), 130.9 bits, see alignment E=3.1e-42

Best Hits

KEGG orthology group: None (inferred from 66% identity to pdi:BDI_3053)

Predicted SEED Role

"FIG00935602: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (242 amino acids)

>HMPREF1078_RS06740 DUF4271 domain-containing protein (Parabacteroides merdae CL09T00C40)
MNIFEGYVGIRLWDGQLVDDVIFSLLLFLFIVFSFVFRTNFQLFVKMLKDAFLVKERQNL
FDDVIGKSIFFFRNFMTFQVLFLSSIALIAVGRIYGFVNYAEWQAVLSAIGTVFCVLFLF
YQFKQCCYYLLGSVFSDPDKYKLWKTSYNAIMGIWGVSLYVPVLWLVFVGTYVTIPIVMF
CILYILCRFVIIYKTIRIFHKKSTGLLYISLYLCGQEILPLVFLYEGMVYLYNFIETSTL
WH