Protein Info for HMPREF1078_RS06700 in Parabacteroides merdae CL09T00C40

Annotation: DUF5107 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1052 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details PF17128: DUF5107" amino acids 49 to 353 (305 residues), 383.7 bits, see alignment E=1.1e-118

Best Hits

Predicted SEED Role

"TPR-domain containing protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1052 amino acids)

>HMPREF1078_RS06700 DUF5107 domain-containing protein (Parabacteroides merdae CL09T00C40)
MKSIFIFFCLMIMDSLYAQHERASVTEMVQNMKTYPFSDPDPVANPSDIFYPYFRFDGFS
EKSIDKEWKVVLLENDYICLTLFPEIGGKIWGAFDKVSKKEFIYNNHVVKFRDIAMRGPW
TSGGIEFNFGIIGHAPTTSTPVDYLTKKKSDGSVSCYISSFDLITRTFWTVEVNLPKDKA
YFTTKTTWYNSSSIDQPYYQWMNAAYKAERNAQFCYPGTNYIGHGGELHSFPFDEQGRDI
SWYEKNNFGNSKSYHVLGQYNDFYGIYWHDDDFGSIHHANYDEKLGMKIFLWGLSREGEI
WKDLLTDTDGQYIELQSGRMFNQPASNSCFTPYKHTAFSPQATDTWIEYWFPVRNIKGVS
KVSSIGALNVLKEKNCLKLYFSPLQQLSTTVKLYEGEQEIYSTFFNCDVLETWEDSIPFK
SRGTCGRLKVVIGDNLLVYSEETSDNVTNRPKELPADFDWNSAYGLYIQGEQWMNQKVYD
KAEKYLTASLEKEAYFLPALTSLASLYYRQGRYEDALFNCHIALSVNAYDGYSNYLYGLC
NMALGNETDAKDGFSVASYSISFRSAAYEKLAEMFLIACDWKKAEHYALKSKDFNQQNLK
ADQVLMIAYRKMGQMNKAKAVIDSLLDDLPLYHLARFEDLLLGTFNEANKNSFASLIRSE
LSFETFMEMAEWYETVGCKDEALILFSFIDDYPIANYKRAWLLYEKGNISESLEMLDRAN
ELSPEYIFPFRSSTIKVLEWAKTLRPNWKIDYYEGLIYWANQNKEKALELFDNCGEVEYA
PFYLSRASLKKGEGRLMDLLKAEQKRISWRTGFALINYYVADHLWEQAVEVGEKYMKRYP
SNYYIGLKYAKSLCEMGQYSQCISLLNKMSVLPNEGAYEGRAVYRAANLYRAIEQLNLGN
YESAMKSVEDSKKWPENLGVGKPYDNMIDNRLENYLEAKVAKKQGDRQKELEILSLVANY
KFSREYFESGNLLSALALQELGKVSEADDMVKIWSIRFPNDQKVQWCTAIYHKEYDKAIE
CLKSRKEQIDSTPWENSFYDSNFDLLVRLFGL