Protein Info for HMPREF1078_RS06235 in Parabacteroides merdae CL09T00C40

Annotation: cyclically-permuted mutarotase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1055 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details PF00657: Lipase_GDSL" amino acids 23 to 205 (183 residues), 30.8 bits, see alignment E=1e-10 PF13472: Lipase_GDSL_2" amino acids 25 to 200 (176 residues), 88.2 bits, see alignment E=3.1e-28 PF03629: SASA" amino acids 300 to 579 (280 residues), 61.8 bits, see alignment E=2.3e-20 TIGR03548: cyclically-permuted mutarotase family protein" amino acids 707 to 1046 (340 residues), 303.1 bits, see alignment E=1.1e-94

Best Hits

Predicted SEED Role

"Sialic acid-specific 9-O-acetylesterase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1055 amino acids)

>HMPREF1078_RS06235 cyclically-permuted mutarotase family protein (Parabacteroides merdae CL09T00C40)
MKNILLCLFIVFSATIQAQKIKVACVGNSVTYGHGIENREKNSYPAQLQRMLGNEYEVAN
FGKSGATLLRKGHRPYNEQEECKAALDFAADRVVIHLGLNDTDPRDWPNYRDDFTKDYLT
LIDAFRQANPKCEIWICRLTPISHRHTRFKSGTRNWYWQIQQNIEDIAVLAHTGLIDLHT
ELYDRPDLLPDALHPTAEGAGIIARTVYRALTGNYGGLQMPVIYSDNMVLQREKPLRIAG
TANAGEKVTVSIAGQKGEAITTSDGKWSVILPPMKAGGPYTLSISAESGKLDYTNILIGE
VWLCSGQSNMAFQVSSAVDSQRKAFLEFAARKPQIRLFDMKPRWLTNAVEWDISTLDSLN
RLQYYRDTEWKECNEETTNRFSAVAFAFGQMLSDSLQVPVGLILNAIGGSPAEAWIDRKT
LEFEFPDILYDWKQNNFIQDWARERAALNIRKSTNKQQRHPYEPCYLYESGIQPLEKFPI
RGIIWYQGESNAHNMEAHEKLFHLLTKNWRENWAEELPFYYVQLSSIDRPSWPWFRDSQR
RMLQSIPNSGMAVSSDHGDSLDVHPRHKREIGERLAHWALNKTYGHEILPSGPLYRSVIF
KDSTAYVTFDYGKGMHSSDGDKLRTFEIAEHDGLFVPAEAQIIDGKTVKVWSGQIRNPKF
VRYGWQPFTRANLVNEAGLPASTFRSEAAPVSWFRLPDLPGTEKSPSLGVSAPFTGVSGG
QLFVAGGCNFPGKPAAEGGTKEYYCNIYALDITARSHAGWKRIGKLPIPLAYGASVTTPE
GLVWIGGNNNKKVSRQVFFVNWDGEKQQLHITELPPLPMPLDNLSATYADGCLYVAGGKG
KPQTVPIGQDGSQTAPTNPLFSLQLTPSLQKEWVRLPDFPGPARIQPVLTAQQSEDGIRL
YLAGGFQPASAHQEAIVCTDMLSYHPKTKQWRNEGFLPSLAGGSHRTVTGGCAIASGDSS
ILLVGGVNYDRFRDALNHPEPDYLLHPVDWYKFNTSLLQYNTFTKHWTHLGNYEELARAG
AGIANNANTVIIIGGELKPGIRTPEVNAFKLTCHP