Protein Info for HMPREF1078_RS05620 in Parabacteroides merdae CL09T00C40

Annotation: tetratricopeptide repeat protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1197 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF13432: TPR_16" amino acids 215 to 260 (46 residues), 19.6 bits, see alignment (E = 1.6e-07)

Best Hits

KEGG orthology group: None (inferred from 74% identity to pdi:BDI_3149)

Predicted SEED Role

"FIG00936378: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1197 amino acids)

>HMPREF1078_RS05620 tetratricopeptide repeat protein (Parabacteroides merdae CL09T00C40)
MKKGFYYIIALLIVSLFWSCSTKKNTKASRFYHAFNSRYNIYFNGKTSFDEALLSMQNGY
KESYSDMILMYPISAQPKDKPETGGPFDRAIEKSNKAIKLHSIKAKPPKKPGWRNDPKQR
AWQEQEEYNPFLKKCWLMMGQAQFYNADFLQASATFSYIARHYAHDEEVVAEARLWQARC
YSEMEWFYEAEDILGKLNTNGIPRKNLNQYAAVYADYLVKNKQYEEAVPYFKTAIKAEKN
RRQRTRMKYLLGQIYAEQDQNGLAYQMFGQVIKANPPYELEFAARIRQTEVFTGGNYQKV
IKMLQRMAKSDKNKDLLDQVYYALGNVYMSREDTVNAIKNYELGVEKSTQNGLDKAICQI
KLGDLYFQKRDYVKAQPNFSGALSGIQKEYKDYERVSKLSAILDELVVHVEAVHLQDSLQ
TLAKMPESERLAVIDKIIEQVKKEEEEAKALAEKEAYLAEQEAKGTGIDRPGTETGGITL
PTTSGGSGFYFYNPQAVSQGKAAFQRKWGRRALEDDWRRRKKEMSTFNENMADETEDASE
GEVGELATDSLEAGLEPAASDDPKTREYYIQQLPLTPEDIQASNIIIEDGLYNMAMIYKD
KLEDIPLATEAFEELERRFPKHSHLLESYYQVYLMALRSGNQALAAAYKNKLVTTFPESD
YAVAIADPNYEYNIRMMDKVQDSIYQATYASYLAEDTVTVRRNYRDVSAKYPLADLLPKF
MFLEALTYVQAGDAEGFKNALKALVEKYPTADVTELAGEMLKGVLRGRMMVQGGIRGMSW
NLRFGVGDDGTLSAADSARVFTAESNTSYRMLLMFPTGTLDRNQLLFAVAAYNFANFMVK
EFDLSFEEAGPMSMLTIHGFFNLDEIFHYYKMIYGADGYATALDKNVAILPISDDNYETL
MRGKTLEEYVEFFQENFGEAVPELAARWKARMAAEQIKEEEAKAEEAEAQDSENIPEEKP
EPVKKTVRPKEQRQQQAVEEVVVPSAVKDTVPVELPAVDTMTVRETETLLPADVDTVSVQ
PVVKDTVVPASSDTVSAVVTPVEQPKELTLKEIEELRKREADEVEARKEEARKAFEAQQK
AEKELQEKKAKENEELLKKQKVEEEALLKAKAEREKQLERDRKAKLKQVEAERKAKLKAR
EELRKQKEREYKERLKQKEKERKQKEREYKEKLKAKEKARREAQKAKEAAAKAKRKR