Protein Info for HMPREF1078_RS05510 in Parabacteroides merdae CL09T00C40

Annotation: gliding motility protein GldM

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 522 signal peptide" amino acids 1 to 34 (34 residues), see Phobius details TIGR03517: gliding motility-associated protein GldM" amino acids 4 to 519 (516 residues), 579.1 bits, see alignment E=4.5e-178 PF12081: GldM_1st" amino acids 34 to 221 (188 residues), 215.3 bits, see alignment E=1.7e-67 PF21601: GldM_2nd" amino acids 224 to 319 (96 residues), 110.1 bits, see alignment E=1.3e-35 PF21602: GldM_3rd" amino acids 322 to 404 (83 residues), 83.1 bits, see alignment E=2.8e-27 PF12080: GldM_4th" amino acids 407 to 522 (116 residues), 109.9 bits, see alignment E=2.4e-35

Best Hits

KEGG orthology group: None (inferred from 80% identity to pdi:BDI_3322)

Predicted SEED Role

"FIG00897148: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (522 amino acids)

>HMPREF1078_RS05510 gliding motility protein GldM (Parabacteroides merdae CL09T00C40)
MAGIANNPNSPRQKMINLMYLVFIAMMALNVSSEVLDGFELVEGSLRTSIDNTSTRNEIV
TEELKAYYQTNPEKVREWYEKGTKVKEASDSLYNYVQDLKVRIAQIADGKDADVNNIDHK
DDLEAASRVMLSPVSGEGKKLRQSIEKYRTLMGEMVEDSAKTRIIEASLSTTPPHKAGIN
TRTWEEALFENMPVAAAVTLLTKLQSDIRYAEGEVLSNLLSSVDMRDYRVNQITAQVIPE
SQIVMRGSQYKANIVLSAVDSTKRPTVYVNGKELPYDANGMFTAVAGTPGTYPVKGYIEM
PGSDGSVMRREFESEYFVTEPSATVAPMLMNVLYAGIANPIRIAVPGVPSGNVTATMTNG
TLVRKGDQWEARPATVGTDAIVSVHAKMADGRNVEMAKTTFRVRALPDPMPFIEYKDQNG
NMRKFRGGQFSKRNLVEADGIQAAIDDDLLNVPFKVLSFELTFYDSMGNIIPEVTQGNQF
SQRQKDYIRRLARGKRFYITHVKVLGPDNKERIIPTVEVIVN