Protein Info for HMPREF1078_RS05210 in Parabacteroides merdae CL09T00C40

Annotation: DUF4980 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 548 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF00251: Glyco_hydro_32N" amino acids 120 to 406 (287 residues), 259.1 bits, see alignment E=1.1e-80

Best Hits

KEGG orthology group: None (inferred from 71% identity to bfs:BF4327)

Predicted SEED Role

"Sucrose-6-phosphate hydrolase (EC 3.2.1.B3)" (EC 3.2.1.B3)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.2.1.B3

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (548 amino acids)

>HMPREF1078_RS05210 DUF4980 domain-containing protein (Parabacteroides merdae CL09T00C40)
MNNKRIGVLASALVGCIFTLSAQDLTMKITKRYLNLPVSHQVDRALMTFDVGGRQERVFE
IRLASGKPDYWVFCDMSALKNKEIKISYTGNKTGINKIYQADEITGQDSLYKETNRPQIH
YTQRRGWNNDPNGLLYYDGEYHLFYQHNPYERDWGNMHWGHAVSNDLIHWEELPIALYPD
EHGTMFSGSAVIDYDNTSGFGKNGIPAMVAIYTADNPEKQVQCIAYSLDKGRTWTKYKGN
PVIDSKAKWNSKDTRDPKVFWHKPSGKWVMVLNERDGHSIYNSDNLKDWTFESHITGFWE
CPELFELPVDGNKDNTKWVMYGASGTYMLGVFDGKKFTPESGKYYYSTGSIYAAQTFTNI
PESDGRRIQIGWGRISHPGMPFNGMMLFPTELSLRTTKDGIRLFSKPIDELDRLQTSVGK
WRALTADKADELLRQYKDASTLRIRTTLKLSHATNAGLNLFGQSLLDYDMNYNRINGVFY
SPEDMTSMEIAADIILDKTSIEVYIDDGAYSYSMERRPDLKNREGFHFFGNNIEVKEMEV
YTSRSIWE