Protein Info for HMPREF1078_RS04840 in Parabacteroides merdae CL09T00C40

Annotation: type IX secretion system sortase PorU

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1121 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF01364: Peptidase_C25" amino acids 382 to 753 (372 residues), 361.9 bits, see alignment E=2.3e-112

Best Hits

Predicted SEED Role

"FIG00936082: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1121 amino acids)

>HMPREF1078_RS04840 type IX secretion system sortase PorU (Parabacteroides merdae CL09T00C40)
MKRILCVLLFVFGLLTSAWADSSRYASESVLNSGKWVKIQVAEDGIYKLTAADLKKMGFS
NLDKVAVYGYGGWPLDEDFSTTYIDDVPEVAVWRGADYLLFYGKGPRKWEYSSSDKSFIH
TNNPYSNYGYYFVTEKETTGRTMEKAASAAGATLQVTTFDDYVLHEEELVSVNSSGRELY
GESFTSTLSRDFTISVPGITNDEGKATLSFISRGNGTITMNVDGNALISGSVSVPSDEYE
VARELYRERAWMADKGETVKVNIGYSTTGHKNVHLNYFRLQMKRQLKVYDNYTFFRSLSA
RGNASRFVIQGADASTLVFDVTDGVNPQQMETSLNGTELSFSIPASASLREFVVVKPSQI
KAPVTVGEVANQNLHALPQQDMIIIAQPNFTTQAERLAEAHRTKDNLTVRVVTPESIYNE
FSSGTPDATAYRRFMKMFYDRKTSEADAPKYLLLFGDGSFDNRKLTSAWKSVDMSNMLLT
YQTENSLSSQSYVIDDYFGFLDDADNKKSLQNKKLCLGIGRFPIRTVEQATQMVDKVISY
MENKNTGSWKNNLCFMADDGSNTDGFMTEHMEFADQLAGYVESEHPEFLVNKLYYDAYKK
DMTAGTYPDVRSGLQKLLKDGLLLFNYTGHGGTTALSDEKVLTQTDINQFTYTHLPVWVT
ATCDFTRFDDLNTSAGEDVFLNKSSGGIALFTTVRVAYSRPNFPINDNVIRNLFERNNGR
RRTLGEVMQATKNTLSSVYKLGFCLIGDPAVKMAYPEFGMKVTTVNGQSVDGNSISFKAL
EKITVEGEVLDVSGQLVTDFTGIVNPTVKDSKVTVTCLKNSNKDDSPAFTFTDYPNTIFI
GNDSVRNGKFSFTFTVPKDISYSNLQGKMNLYAVDTESGNEAQGNFDNFIVGGTSDTAET
DTIGPEIRALYLNDTTFVDGGQVNTTPYFVAELWDKSGVNITGSSVGHDMMLVIDESTVL
SYNLNSYYELLPGEDGTGIVKFPIPALEPGKHTAEFWVWDILNNSTVRTFTFEVVEGLKP
FLFDVIATPGIAREQVTFHLMHNRPESRMRVGIMVYDLAGRQLWKHEESGTSGLFENYTV
SWDLTSGGVRMRPGVYIYRAAISTDNSKDATKARKFIILGE