Protein Info for HMPREF1078_RS04805 in Parabacteroides merdae CL09T00C40

Annotation: UvrD-helicase domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1075 PF00580: UvrD-helicase" amino acids 7 to 153 (147 residues), 59.6 bits, see alignment E=1.3e-19 amino acids 343 to 438 (96 residues), 56.4 bits, see alignment E=1.2e-18 PF13361: UvrD_C" amino acids 690 to 829 (140 residues), 32.6 bits, see alignment E=1.9e-11 PF12705: PDDEXK_1" amino acids 933 to 1069 (137 residues), 27.1 bits, see alignment E=1.2e-09 PF01930: Cas_Cas4" amino acids 1011 to 1073 (63 residues), 22.9 bits, see alignment 2.5e-08

Best Hits

Predicted SEED Role

"FIG003033: Helicase domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1075 amino acids)

>HMPREF1078_RS04805 UvrD-helicase domain-containing protein (Parabacteroides merdae CL09T00C40)
MLTVYRASAGAGKTHKLTGEYLTLLFTGPGAFRRILAVTFTNKATDEMKTRIVDELYNLA
SGRKSDYVELLKSAYSLTEIQVRKQAAQILIDILHDYSAFNISTIDRFFQQTMRAFTREI
GLQGGYGIEMDQELVLTTAIDNLLSDLEKPESKDLLGWLLRFAEDKIESGGEWNLRKDIM
ALSREVFKESYKAFSEAVGRDIEDKKALEDYKNELYGIIRSVEATAKELGERGLAILNKY
GLKVTDFKGGSRSPLTLLDRLVQGEMKEPSATFIGLADNLDGCFTKTVSLGTRQIIGCAF
EDGLNDCIKGIISLFGNLTAYNTAREIVRYYYTLGILTDVSRQIAAYREEKNVMLIADTT
ELLSKVIEGSDAPFIYEKTGTHVDHYMIDEFQDTSGMQWNNFRPLIEESLAHSRDNLIVG
DVKQSIYRFRNSDWKLLDEQVQADFSPEVVHEETLKDNWRSCRNIVEFNNALFTTLPGVL
QAVYNEALSVSSLSEEQRAAFFTKIMSAYDKSFQQVPPPFMQKDGHVRIEFLSGDNEKDW
KEEALGRLPGVLEKLQDNGYALKDIAILVRTNQEGAQVADTLLAYKEEHPSNRYNYDIIS
DEALFVSGSTAVRFMVSLLRYLKNPEDRTNEQIALYSYQVLKGRFGVETPAFPPEVVSVL
QILSRQSLYEITEGLFRLFADDFPENEQVFVQAFLDMVSEYTQKESADLNRFLKWWDETG
CRKTIATPDRQNAIRILTVHKSKGLGFKVVIIPFGDWEIDHKPTKPVILWCHPEEKPFDR
LHLVPVRYGQSLGKTIFAGDYFKERLHAFIDNLNTLYVAFTRSKDELIVFSPRPKKMKDA
TGEVEKISTLTDALWAGLRTDMPDTREGEKLILLPAAFDTGTGVFELGDWWHPVAKEENG
DIQEIGMARLSSISPDDRLQLRLHGKGYFFDNARRKHGALMHEVLSRIRTRKDIPQSVER
YHQEGVIDKEEAIALVARLEELLNLPEAASWYDGTARVLNEVDILFGKGLSKRPDRVMIT
GNRVVVVDYKFGEHADQRYHSQVRNYLKLIRQMGYDEVEGFLWYVELNKIEAVKG