Protein Info for HMPREF1078_RS04485 in Parabacteroides merdae CL09T00C40

Annotation: T9SS type A sorting domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 109 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details TIGR04183: Por secretion system C-terminal sorting domain" amino acids 52 to 102 (51 residues), 24.5 bits, see alignment E=1.1e-09

Best Hits

Predicted SEED Role

"FIG00899040: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (109 amino acids)

>HMPREF1078_RS04485 T9SS type A sorting domain-containing protein (Parabacteroides merdae CL09T00C40)
MKVLITFVLLLAAWAGCPLEVMAQQANTTVSRTTVAKDKEPDSVEISAYDNKIVVENAPA
GSKLEVYSVVGIRVKEIPMKQPSGEYTVDLAKGYYIVRIGDTVRKVSIR