Protein Info for HMPREF1078_RS03340 in Parabacteroides merdae CL09T00C40

Annotation: TraG family conjugative transposon ATPase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 944 transmembrane" amino acids 732 to 749 (18 residues), see Phobius details PF19044: P-loop_TraG" amino acids 391 to 530 (140 residues), 119.1 bits, see alignment E=2e-38 amino acids 616 to 917 (302 residues), 304.5 bits, see alignment E=1e-94 TIGR03783: Bacteroides conjugation system ATPase, TraG family" amino acids 661 to 917 (257 residues), 287.8 bits, see alignment E=7.3e-90

Best Hits

KEGG orthology group: None (inferred from 86% identity to bvu:BVU_3371)

Predicted SEED Role

"Conjugative transposon protein TraG" in subsystem Conjugative transposon, Bacteroidales

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (944 amino acids)

>HMPREF1078_RS03340 TraG family conjugative transposon ATPase (Parabacteroides merdae CL09T00C40)
MAHKRKRIFDGLYAQLEETDGNVVLFSARGEPSVIFEITNPVQQLCTDAQQYMLFHDVLS
NILQTIGEGYALQKQDILCRQAYHHDVPDDAEFLTRSYFRYFEGREFTEIRTFLILTQEA
QRSQFIQYDPKRWLDFHSKVSKTDDILTEKHIRHRKLGKEEVSEYCHRFMAFQFRHGAFS
MTNFKASDEYLRTGDRIIRSYPLVDIDEINLPSMVKPYTQMNINSYRIATDLLSFLTGVP
YSDCVVFNQVIQIPGQRKLLRKLQAKAKRHGSMPDPSNRIARADIEEVLDRLAVDSTMLV
YCNFNILVSSPPDKVTPVTSFLETKLYECGIMPSRTAYNQLELFMDCFPGNGYAFNPDYD
LFLTLSDAALCFFFKEHLKESEDTPLTTYYTDRQGLPVCIDITGKEGKRKMTDNANFFCI
GPSGSGKSFHMNSVVRQLLEQNTDVVMVDTGDSYEGICRYYKGTYIAYSKEKPISMNPFK
VTKEEYELNFGEKKNFLKSLIFLIFKGNAFPTKIEDMLINQTIVEYYEAYFNPFEGFSDS
EREALRQKLLVAAKMEDDYEQYTHSMEDIDRQINTEEVQEKAESRALLLPSEVRRLKLIR
QCRSLTALINDEAATESEKERALAIIEKYKRELYNNSMLIKIDRQIDHMEEQKRRLKVQE
LSFNSYYEFALERIPQITQLEKISFNIHDFAAILKQFYRGGELEMTLNSDLDINLFDERF
IVFEIDKIKDDPVLFPIVVLIIMDVFLQKMRIKKGRKALIIEEAWKAIASPTMAEYIKYL
YKTVRKFHGIAGVVTQELNDVIDSPIVKEAIINNSDVKILLDQTKFKDRYEDIAAILGLT
DIQRQQIFTINALNNHEGRSYFKEVWICRGQHSDVYGVEEAPECYWAYTTERTEKEALKI
YLARYGTLQEAITRIEEDRKADGGLLYLEFARKVNQHQKVMSLW