Protein Info for HMPREF1078_RS02665 in Parabacteroides merdae CL09T00C40

Annotation: glycosyltransferase family 4 protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 293 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details PF13439: Glyco_transf_4" amino acids 4 to 92 (89 residues), 39.3 bits, see alignment E=1.8e-13 PF00534: Glycos_transf_1" amino acids 102 to 270 (169 residues), 111.1 bits, see alignment E=1.1e-35 PF20706: GT4-conflict" amino acids 112 to 234 (123 residues), 35.1 bits, see alignment E=2e-12 PF13692: Glyco_trans_1_4" amino acids 118 to 258 (141 residues), 88.9 bits, see alignment E=9.8e-29 PF13524: Glyco_trans_1_2" amino acids 195 to 279 (85 residues), 25.8 bits, see alignment E=2.5e-09

Best Hits

Predicted SEED Role

"glycosyl transferase, group 1"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (293 amino acids)

>HMPREF1078_RS02665 glycosyltransferase family 4 protein (Parabacteroides merdae CL09T00C40)
MIGVIKREKIDIVHFHFGSYLIAPFLRILFPRIRIISTRHSEIFVSNKLKKLYLKFCFFP
FERFLCVSCGVKKEMIEGVGFSSKSEVLYLGVRKKKIVNPNLKKTLDIPKGVVVLTTIGF
NIRIKGFDILVKSIQSLMDSNRLKNDIIVLVIGISENSEDSNSLRQLIAEAGLNRKIMSL
GIRNDINDILNISDIYLQPSRTEGLSLSIMEALNYSLPVIGTRVGGIPEIVHEGENGYLF
EKENVEELADRIEILVNNREVREMMGRKSKVISSRFTLADGVEKLASIYHQTN