Protein Info for HMPREF1078_RS01870 in Parabacteroides merdae CL09T00C40

Annotation: phosphatase PAP2 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 230 transmembrane" amino acids 27 to 50 (24 residues), see Phobius details amino acids 57 to 76 (20 residues), see Phobius details amino acids 107 to 128 (22 residues), see Phobius details amino acids 134 to 155 (22 residues), see Phobius details amino acids 161 to 179 (19 residues), see Phobius details amino acids 205 to 226 (22 residues), see Phobius details PF14378: PAP2_3" amino acids 35 to 169 (135 residues), 32.6 bits, see alignment E=7.2e-12 PF01569: PAP2" amino acids 63 to 180 (118 residues), 80.4 bits, see alignment E=1.1e-26

Best Hits

KEGG orthology group: None (inferred from 81% identity to pdi:BDI_0953)

Predicted SEED Role

"putative membrane-associated phospholipid phosphatase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (230 amino acids)

>HMPREF1078_RS01870 phosphatase PAP2 family protein (Parabacteroides merdae CL09T00C40)
MVEKILIYERDAFFALNGSDSAFLDRFMWIFTGKAVWLPLAFLILLVLIYKKNWRESLLI
LLAIVLVVTLCDQFASHVCKPVFTRFRPTHHPDFMDQVKTVFGYRGGLYGFISSHAANAF
GFATLMALIMRDKLFGWTIFFWAALTAYTRVYLGVHFISDIVPGAISGVFFGYLVYRLYS
FSRSKLLPVQVNNGEPLYSKKRIRLIVYAIYVTILIIIVFNVPLAACLQK