Protein Info for HMPREF1078_RS01550 in Parabacteroides merdae CL09T00C40

Annotation: glycosyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 353 signal peptide" amino acids 1 to 16 (16 residues), see Phobius details transmembrane" amino acids 93 to 107 (15 residues), see Phobius details PF13439: Glyco_transf_4" amino acids 12 to 167 (156 residues), 87.4 bits, see alignment E=2.3e-28 PF13579: Glyco_trans_4_4" amino acids 13 to 150 (138 residues), 43.6 bits, see alignment E=8.4e-15 PF00534: Glycos_transf_1" amino acids 175 to 333 (159 residues), 99.5 bits, see alignment E=3.1e-32 PF13692: Glyco_trans_1_4" amino acids 185 to 316 (132 residues), 91.4 bits, see alignment E=1.3e-29

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (353 amino acids)

>HMPREF1078_RS01550 glycosyltransferase (Parabacteroides merdae CL09T00C40)
MRILQVITSLHIGGAEKLIVDMVPLYQELGYQVDVLLFDGTETPFKRQLQDKGVTIYELG
KGGSVYNPLYIFRLIPFLRKYDIVHTHNTACQLFAAIGSVLCSVVLVTTEHNTSNRRRDW
KCYKLLDKWMYSRYRSIICISDKAHENLCHYLGTSKSIKTIYNGIDLMRFQEVQADASFR
NGKTVVTMVAGFRYQKDQDTLIKAFQYLPTEQYELWLVGDGERRSTLEDLVSRLGILENV
RFWGIRSDIPVLLKSSDIIVMSSHFEGLSLSSIEGMAVDRPFIASDVDGLHEITKNAGIL
FPHGDAKALANIILRLKEEPYYRQIADRCQQRASKYDIRKTVTAYLEIYKQLV