Protein Info for HMPREF1078_RS01405 in Parabacteroides merdae CL09T00C40

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 376 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 60 to 78 (19 residues), see Phobius details amino acids 98 to 115 (18 residues), see Phobius details amino acids 121 to 142 (22 residues), see Phobius details amino acids 150 to 169 (20 residues), see Phobius details amino acids 215 to 237 (23 residues), see Phobius details amino acids 249 to 268 (20 residues), see Phobius details amino acids 277 to 298 (22 residues), see Phobius details amino acids 318 to 339 (22 residues), see Phobius details amino acids 347 to 368 (22 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 76% identity to pdi:BDI_1341)

Predicted SEED Role

"N-acetylglucosamine related transporter, NagX" in subsystem Chitin and N-acetylglucosamine utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (376 amino acids)

>HMPREF1078_RS01405 hypothetical protein (Parabacteroides merdae CL09T00C40)
MKPSYQRLESLDVLRGFDLFCLVALEGVLHPLGRAIDAPWYNDFLWCFSHVQWEGFSSWD
LVMPLFMFMAGVSMPFALSRYKVMPDKWAVYRRIVKRVALLWIFGMMCQGNLLGLDPDRI
YLYSNTLQAIAMGYLISAMLFLHVRLSVQIGTAVALLLAYWGAMQFITVDGYGGGNYTPD
GNLAEWVDRTVLGRFRDAAVVENGQIVFAESYRYTWILSSLNFGVTVLTGVFAGHILKSG
MDRKHKWQWLLGIGVIMVALGWLWGLQLPVIKKIWTSSMVLVSSGYCFLLMGLFYYWIDY
KGHRKNLTWLKVYGMNSIVAYMLANVISFRCIGTSLFHGLEQYTGNYYPALIAASNALII
YVILWLLYKRNIFLKV