Protein Info for HMPREF1078_RS01400 in Parabacteroides merdae CL09T00C40

Annotation: DUF5009 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 370 transmembrane" amino acids 21 to 43 (23 residues), see Phobius details amino acids 63 to 80 (18 residues), see Phobius details amino acids 101 to 119 (19 residues), see Phobius details amino acids 126 to 144 (19 residues), see Phobius details amino acids 152 to 170 (19 residues), see Phobius details amino acids 207 to 228 (22 residues), see Phobius details amino acids 240 to 261 (22 residues), see Phobius details amino acids 267 to 290 (24 residues), see Phobius details amino acids 301 to 320 (20 residues), see Phobius details amino acids 340 to 362 (23 residues), see Phobius details PF16401: DUF5009" amino acids 10 to 108 (99 residues), 44.2 bits, see alignment E=8.7e-16

Best Hits

KEGG orthology group: None (inferred from 80% identity to pdi:BDI_1342)

Predicted SEED Role

"N-acetylglucosamine related transporter, NagX" in subsystem Chitin and N-acetylglucosamine utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (370 amino acids)

>HMPREF1078_RS01400 DUF5009 domain-containing protein (Parabacteroides merdae CL09T00C40)
MEKQKQSRRLLSLDALRGFDMFFIMGGASLFVALATLFPNSFFQAIGGQMDHVEWDGLTH
HDTIFPLFLFIAGISFPFSLEKQREQGKSESDIYKRIVRRGITLVLLGCVYNGLLQFDFA
NLRCASVLARIGLGWMFAALLFVHFRTSVRAWIAGTILVGYWVWIAFIPVPGAEAGPFTL
EGNWVGYVDRLLLPGRLHQGFFDPEGLLSTLPGIVTAMLGMFTGEFIKLRKEGLTDKRKV
AGLVLAGVLLLLVGVLWSLVFPINKKLWSSSFVCVVGAYSVWMFALFYYIVDVLGWRKWT
FFFQVIGVNSITIYLAQKFIDFSYTSQGLFGGLVGWMPEAAQPLASSIGYIAVCWGFLYF
LYRQRIFLKV