Protein Info for HMPREF1078_RS00900 in Parabacteroides merdae CL09T00C40

Annotation: efflux RND transporter permease subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1038 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details transmembrane" amino acids 349 to 366 (18 residues), see Phobius details amino acids 373 to 393 (21 residues), see Phobius details amino acids 399 to 417 (19 residues), see Phobius details amino acids 455 to 473 (19 residues), see Phobius details amino acids 483 to 510 (28 residues), see Phobius details amino acids 546 to 566 (21 residues), see Phobius details amino acids 874 to 891 (18 residues), see Phobius details amino acids 902 to 921 (20 residues), see Phobius details amino acids 927 to 948 (22 residues), see Phobius details amino acids 974 to 993 (20 residues), see Phobius details amino acids 1006 to 1032 (27 residues), see Phobius details TIGR00914: heavy metal efflux pump, CzcA family" amino acids 1 to 1037 (1037 residues), 816.2 bits, see alignment E=2e-249 PF00873: ACR_tran" amino acids 6 to 1032 (1027 residues), 885.9 bits, see alignment E=3.5e-270 PF03176: MMPL" amino acids 291 to 524 (234 residues), 31.6 bits, see alignment E=8.7e-12

Best Hits

KEGG orthology group: None (inferred from 87% identity to pdi:BDI_1605)

Predicted SEED Role

"Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1038 amino acids)

>HMPREF1078_RS00900 efflux RND transporter permease subunit (Parabacteroides merdae CL09T00C40)
MLNKIIYYSLHNRLVVLICSLLLMIAGTYTAFHTDVDVFPDLNAPTVVIMTEANGMAPEE
VERLVTFPVETAVNGAMDVRRVRSSSTTGFSVVWVEFDWGTDIYRARQIVSEKLAVVSES
LPENVGKPTLGPQSSILGEMMIIGLTVDDSKSGSRIAPTTQMDLRTIADWTIRPRLLSTG
GVAQVAVIGGDIKEYQILLDPARMKHYGVSLGEVLAVTRNMNRNANGGVLYEYDNEYIIR
GVLSTANAEEIGKGVVKIVGDFPVLLENIATVKIGSKSPKLGTASERAKPAVLITVTKQP
NTSTIDLTEKLDAIMADLQKNLPADVHVSTDIFRQSRFIDSSIDNVKNSLFEGSFFVVIV
LFLFLMNIRTTVISLVALPLSLLVSILTLHYMGLTINTMSLGGMAIAIGSLVDDAIVDVE
NVYKRIRENHLLPSDQQRSILEVVFDASREVRMPILNSTLIIVVSFVPLFFLSGMEGRML
VPLGIAFIVALFASTVVALTLTPVLCSYLLNRKPTDKKVEKEAWVARKLKDLYGKALNGA
LAHKNMVLGCTIGLFLVALGMFFTLGRSFLPPFNEGSFTINVSSLPGISLEESDEMGRRA
EELLMQVPEIQTVARKTGRAELDEHALGVNVSEIEAPFVLKDRSRDAVMNDVREKLSTIS
GANIEIGQPISHRIDAMLSGTEANIAIKLFGTDLNLMFTVGNQIKEAIQGIPGLVDLKVE
QQIERPQLTITPKRELMAQYGITLPEFEEYVNVMLGGEAVSQVYDNGKTFDLTVKTSDES
RATMEDIRNLMIDAGGKKVPLSYVAEIRSVTGPNTINRENVQRKIVISGNVSERDLRSIV
NEIQQKIDASIQLPEGYHIEYGGQFESEQAASRTLLLTSLMSLLVIFLLLYNEFKNAKES
GVILLNLPLALIGGVFILKLTSGEVSIPAIIGFISLFGIATRNGMLLISHYTHLRTVENV
PLKQAVLQGSMDRLNPILMTALSSALALIPLALNGDLPGNEIQSPMATVILGGLLTSTFL
NGFIIPIVYLLMNKEDKE