Protein Info for HMPREF1078_RS00865 in Parabacteroides merdae CL09T00C40

Annotation: MG2 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1843 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF11974: bMG3" amino acids 511 to 606 (96 residues), 70.4 bits, see alignment 4.4e-23 PF01835: MG2" amino acids 613 to 700 (88 residues), 63.2 bits, see alignment 1e-20 PF17972: bMG5" amino acids 712 to 824 (113 residues), 35.7 bits, see alignment 4.1e-12 PF17962: bMG6" amino acids 843 to 959 (117 residues), 77.8 bits, see alignment 2.9e-25 PF07703: A2M_BRD" amino acids 977 to 1119 (143 residues), 78.2 bits, see alignment 3.2e-25 PF00207: A2M" amino acids 1194 to 1270 (77 residues), 30.9 bits, see alignment (E = 7.7e-11) PF07678: TED_complement" amino acids 1380 to 1471 (92 residues), 25.4 bits, see alignment 2.7e-09 PF17973: bMG10" amino acids 1706 to 1828 (123 residues), 61 bits, see alignment 5.3e-20

Best Hits

Predicted SEED Role

"FIG00897099: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1843 amino acids)

>HMPREF1078_RS00865 MG2 domain-containing protein (Parabacteroides merdae CL09T00C40)
MAKYLYYICACCFLFLFSRCGKGKSESEEIPFNPYVEAFTSGTISRYTPVYLIFNQEIAV
DRMEPDQLRDLVKIKPETVGEFAFENNRTIVFKPSKSFERDTRYEVKADLSEWFDTERKD
KYFSFRFSTQPLLLRANLQSVDINRKNENGYDIVCSVFTPDREIPETVESLVRFSEKANA
RWQHSPDGKRHEISISNIQAGTDATRAFKLSVAPNKLKVPEEELLSVDIPELNDFAVYEV
EYVAEPERYVEVTFTKLLDAAQNMQGLAWIDGNKSETVNVEGNKLRLYPDAGSKGALNVH
LSQNIRSKNGLNLKESVVRQIVVSDEKPEVRFIGNGVIIPQSTQLTIPFQAVYLRGVVVR
VIKIFEQNIGQFLQVNDLEGTSDLMRVGRLIARKTIFLDEDATQDLSRWNTYAIDLKELI
DPEPGAIYRVELSFNRDLSAYPCEDLVKKSKEQLLADDEIKFKEESSRFDGGGYYYYNGD
FDWSDYDYSKRGDPCSNSYYYNTTVGKNVLATNLGLLAMAGEDNDMTVLVHNILSTHPEK
GVKVVVYNYQRQELASGVTDDKGQVRFSLKNGKPFYLTASLGQQRSYLRVDDGSALSLSS
FDVSGEVVQKGIKGFIYGDRGVWRPGDTLHLGFMLNDRSRMLPANHPVIMELYNPLGQFY
LRKTQTKGEAGLYVFDMPTEPDAPTGAWNVNVNVGGVTFTKRLRIETIKPNRLKISLTMP
PKKLLRGEPLDAAMHVEWLQGATARNLKYDIQGTFISTPTTFSGYKKFYFDDPSKIFNSE
ESKVISGVTDAAGDATIKARFEIGASAPGMLLASFVTRVYEESGDFSIDANRAFYSPYRR
YAGIKSPQQDGEPLKTGTEYKYEVASVDYLGQAVANTELEVKVYKVHWYWWWSSDNGSLA
NYVSNSYNKPVKTFTIRTGTNGTASFNLKYTDADWGTYFISVKDKESKHSTGVMNYFDWP
YSEGRRDADGSSSANMLTFKTDKDTYAPGEQIVVTFPSVKGSRAIISIENGTRVLSTTEH
MCNDGQTTVKLAVTPDMQPNAYLYITLLQPHGVTKNDLPIRMYGVVPFTVTSPESHLAPI
IHMADEVKPEAPCHVMVSEKNGREMAYTLAIVDEGLLDLTRFRTPDPWQAFNAREALGVN
TWDLYNYVVGAYGGRIEQLFSIGGDDALNKGPKAIVNRFKPVVQFAGPFLLKKGEKRQHI
YKMPNYNGRVRVMVVAGNGEAYGNTEKSVLVRKPVMLLGTLPRVIGIGEEMVVPATVFAT
EKGVGDVQVTIACSGNMEVVGEKSHMLHFETVSDKLAQFRIRVKDTPGAGHVKITATGGG
EKSVYETDIEIRSVRRPQIKVTPVTLEAGKSWKGTVGLPGVEGTNSLVLEMSDVQPVNLS
TRLSYLLGYPHGCVEQITSKAFPQLYLSGFASLTREQEQSTEATVKEVIRRLRSYQTVDG
SFSYWPGGTAPNAWGTVYAIHFLLEAEKKGYLVPEGMKRNALNDLSRIARNWKPEASYSA
ESEEMTQAYRLFVLALGQVAEVGAMNRLKESKTLMSMSRYLLAAGYALVGRPDVSKELVV
KTTALTTACSGYDQTFGSDLRDASIRLMTLCLLDGGKEAALLANEISKTLASDDWLSTQS
TAFSLVALSDYMEKYKMSGSMDFSYAVDGKAKKVSTTRNIWTETLLDKTAFSASLELKNT
GKSTLFARLVAEGIPAEGKEEAYANGLTLAVSYMDHDGHPVNTSALQQGTNFTAVVTVSN
SSPRGYNHLVLTEVFPAGWEILNTRFLTGDTVDNQVTGVNYQDIRDDRAYSYIDYLPAGK
QVTVRINLCAVYPGRFYLPPVYCEAMYDHLVRANTEGKMVTVE