Protein Info for HMPREF1078_RS00560 in Parabacteroides merdae CL09T00C40

Annotation: GtrA family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 168 transmembrane" amino acids 21 to 43 (23 residues), see Phobius details amino acids 49 to 68 (20 residues), see Phobius details amino acids 88 to 107 (20 residues), see Phobius details amino acids 127 to 145 (19 residues), see Phobius details PF04138: GtrA_DPMS_TM" amino acids 31 to 152 (122 residues), 55.3 bits, see alignment E=3.8e-19

Best Hits

KEGG orthology group: None (inferred from 60% identity to bth:BT_1524)

Predicted SEED Role

"FIG00403675: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (168 amino acids)

>HMPREF1078_RS00560 GtrA family protein (Parabacteroides merdae CL09T00C40)
MVDWIKKSARAFSEKGGIFMFIRAQFSSQVASTTDFLVTILLVKLFGVYYVYATFTGSVC
GGIVNCIINYKWTFKSKECKKRHVIVKYLLVWIGSILLNTWGIYFMTETISRNPWVQETL
KHYIDDLFVFSKIVVSLLVGFLWNYNMQRIFVYKNCRIRDRFQKANSK