Protein Info for HMPREF1078_RS00355 in Parabacteroides merdae CL09T00C40

Annotation: putative porin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 703 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF14121: Porin_10" amino acids 60 to 703 (644 residues), 665.9 bits, see alignment E=3.3e-204

Best Hits

Predicted SEED Role

"FIG00936866: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (703 amino acids)

>HMPREF1078_RS00355 putative porin (Parabacteroides merdae CL09T00C40)
MKHSLYILLLLIISASALHAQRRPGGDRKGFSLGNLSKANQEVPDSLLIPDSAAISNRRI
TAYRLTPLLGDPYIAPLDTHKLNFANSTLVESESLAVGYLANTGSPAQTRIFSERKEPRD
FLFADAYDYYITDPQNAQYYNTKIPYTNVMYTTMGGSESKNERLKGTLTMNFGPKINVGG
DLDYIYSRGYYKNNGNKLLSYRLFGSYKSDRYEAHAYLSNFNFINYENGGLANDSVITNP
DQYFAGERNQDDPKAFNTRYPVKAWNRVRGKQYFLSHHYNLGFERELEGEVDTLGNPVKV
FIPVSSIIHTLEYQDNRRRFRSEANENLNECYLTPDGYPRVFGLENGTGVDDRTSYWNLR
NTFGLSLREGFQDWAKFGITAFATFDKRKFQLPAQIPGLSYDPEYGSGLNASPSTIEFPI
TQVYDEFSTYIGAEISKRRGNILTYNARGELCVVGDDIGEFRATGNLQTKFKLLKKDATI
SAEGYIKNVTPSFYMRHFHSRYFWWDNRDMNMIQQIYAGVKINLESTRTQLSAGVESIQN
YVFFNKQGMPEQKSGNLQVINARIKQDVMYRAFGWENEVAYQLSSDKSVLPLPQISLYTN
MYLKFKVAKVLMVQLGANMYYNTSYYAPYYEPATQQFQVQDEVKVGNYPLVNAYVNFHLK
QARFFVMGYNLGSKFVNPNYFSLAHYPLDPFVLKMGVAVTFNN