Protein Info for HMPREF1078_RS00195 in Parabacteroides merdae CL09T00C40

Annotation: undecaprenyl-phosphate glucose phosphotransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 465 transmembrane" amino acids 7 to 32 (26 residues), see Phobius details amino acids 49 to 70 (22 residues), see Phobius details amino acids 82 to 100 (19 residues), see Phobius details amino acids 106 to 128 (23 residues), see Phobius details amino acids 279 to 301 (23 residues), see Phobius details amino acids 441 to 458 (18 residues), see Phobius details TIGR03025: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase" amino acids 18 to 465 (448 residues), 430.2 bits, see alignment E=1.2e-132 TIGR03023: undecaprenyl-phosphate glucose phosphotransferase" amino acids 19 to 465 (447 residues), 473.4 bits, see alignment E=1e-145 PF13727: CoA_binding_3" amino acids 88 to 237 (150 residues), 80.1 bits, see alignment E=2.1e-26 PF02397: Bac_transf" amino acids 274 to 459 (186 residues), 232.1 bits, see alignment E=3.3e-73

Best Hits

KEGG orthology group: None (inferred from 83% identity to pdi:BDI_0654)

Predicted SEED Role

"Glycosyltransferase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (465 amino acids)

>HMPREF1078_RS00195 undecaprenyl-phosphate glucose phosphotransferase (Parabacteroides merdae CL09T00C40)
MESNKKYGYLIQWLIGIGDLIVLNILFFIVYYGLNSIHTLAITGSLREVVLLLNFCYFFS
LYFVPLRLHLSIVFIDKIVQRAFFLVTIMFFLFATCLIFLNVGDVLATFLLVYYAVTLVV
FSLWRVIVRVTLKMYRRKGYNFKKIVIVGAGKNGMELYKVMKDDLSYGFNILGFFDDNQS
LKSVLPNYLGMTNEVENFVLANDVDEIYCTLPGTNDEKIVRLLNFAEKHMIRFYIVPEFY
RNLKKSLVMDVLESIPLMTVRREPLQAAYNRALKRAFDILFSTVILVTIFPILYIVVGIM
IKLSSPGPILFKQKRTGLYGQDFRCYKFRTMKVNAQADSLQAVKDDPRKTKVGDFLRRTN
LDEFPQFINVLRGEMSVVGPRPHMLKHTEQYSALIDKYMVRHLVKPGVTGWAQVTGYRGE
TKTLEQMEGRVKRDVWYIENWSFFLDLKIIVVTVINMFKGEKNAY