Protein Info for HMPREF1058_RS18305 in Phocaeicola vulgatus CL09T03C04

Annotation: TonB-dependent receptor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1151 signal peptide" amino acids 1 to 38 (38 residues), see Phobius details TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 51 to 1151 (1101 residues), 835.4 bits, see alignment E=8.4e-255 PF13620: CarboxypepD_reg" amino acids 52 to 113 (62 residues), 43.9 bits, see alignment 3.9e-15 PF13715: CarbopepD_reg_2" amino acids 53 to 133 (81 residues), 71.3 bits, see alignment 8.5e-24 PF07715: Plug" amino acids 141 to 259 (119 residues), 57.6 bits, see alignment E=2.6e-19 TIGR04057: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region" amino acids 236 to 265 (30 residues), 47.3 bits, see alignment (E = 1.4e-16)

Best Hits

KEGG orthology group: None (inferred from 100% identity to bvu:BVU_2913)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I9ULM8 at UniProt or InterPro

Protein Sequence (1151 amino acids)

>HMPREF1058_RS18305 TonB-dependent receptor (Phocaeicola vulgatus CL09T03C04)
MENENAFLQKLDKIGNLTQVVCLSLFLTGVSVQGVSAETGFPISQSVQQTKTVTGQVVDE
TGEPVIGASVVVEGTTNGTITDFDGRFALQVPSGKKVVISFVGYVPQTIAPKQGKDFRVV
LTEDSKMLDEVVVVGYGTQKAKDVTGSIGVITPSEISDLPVSNLGAALAGQIPGLSISGG
DSRPGEGATMSIRQSFSYSKDGGSTNPMVIIDDVIQIDANSGLPTLETFNALDPSEIESI
SVLRDASAAIYGSRASQGAIIVKTKRGKSGAPKINYSGKFGFNDAVGHPKTLKGAAYGRF
ANSFNLANNKISMDPDGNWMNKIYNEAELAEMDGLNYNWLDEAWSGAFTMNHSVNVSGGS
EKATYFAGASYYTQGANLGKQDYNRWNFRAGVDIKLTSDLKFSATIAGNQQETTSSFTKG
LSNLNGYGGTKPGESGDYLVLAHMPNYLPWEITLDDGNTYYTSPLLNSYSSAGNATSGNK
MSTWNYFAMENNDGSYSTNDNFSYDANFSVTYAVPFIKGLSFKGSYALKRSASDSEQAFM
PFTLAYLKASDALTPGNRFYSDHPSVSDYQLKEFTGSTRVVYSDQMAKNEQLNFYVNYEG
KFGKHSIAAMAAVEKMQAYMHSKRMLFNNPDPDGYLGTSPSAGAMDTGNSITYKYKQGSL
SYLGRVSYNYADKYLFQFLFRSDASTKFAPANYWGFFPGVSVGWVASEEEFMKKLLPSWF
EYMKVRFSWGRTGKDNIKAWGWKQLYSLDPSRGYGFGSNGGILQTGIKPGATPNPDAHWD
NTDKFNLGFDLRFLNNRLSATVDVYYDINSDILNQNIGGIIGTPIFAGGALTEVNFGRID
AFGSEFSLNWRDKIDQVKYNIGVNFGFNGNRVREWPQSAPSYIQENSVREGASTIFPTYG
YKVWRGTSSGDGILRNSDDIENYWNYLSANAEAAGTSPEYLGVKDASQLKPGMLAYQDLG
GVLNEDGTQSGPDGRIAKTQDYAKLNKSGKTYGFTTKLGAEWKGISFNMMIATSWGGYRQ
IDVNKITTSSGDMLWTPDSFWEDMFDERNNTTGKYPNLGLDNRISGSVIAPSDFWSISTF
RCYIRNLSIGYTLPKAWLSPLKIQSAKLSLTGNNLWDFYNPYPDHYRNMYCGTTSLYPTL
RTWSLGVNVSF