Protein Info for HMPREF1058_RS18170 in Phocaeicola vulgatus CL09T03C04

Annotation: MobC family plasmid mobilization relaxosome protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 127 PF05713: MobC" amino acids 72 to 115 (44 residues), 46.1 bits, see alignment E=2.6e-16

Best Hits

KEGG orthology group: None (inferred from 91% identity to bfs:BF3284)

Predicted SEED Role

"mobilization protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I9A8A9 at UniProt or InterPro

Protein Sequence (127 amino acids)

>HMPREF1058_RS18170 MobC family plasmid mobilization relaxosome protein (Phocaeicola vulgatus CL09T03C04)
MTEIRNKPGGRPAKSRIDKQKRVVSTKLTELQYYAIKKRAGESGLPVSEYVRQAVVSAEI
TPRLNRQDADTIRKLAGEANNINQLAHRANAGGFALVAVELVKLKNRIVEIINQLSDDWK
NKKGKRI