Protein Info for HMPREF1058_RS17825 in Phocaeicola vulgatus CL09T03C04

Annotation: carboxypeptidase regulatory-like domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1113 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF13620: CarboxypepD_reg" amino acids 29 to 109 (81 residues), 68.3 bits, see alignment 6.3e-23 PF13715: CarbopepD_reg_2" amino acids 30 to 121 (92 residues), 54.5 bits, see alignment E=9.5e-19

Best Hits

KEGG orthology group: None (inferred from 100% identity to bvu:BVU_2749)

Predicted SEED Role

"Oar protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I9J9B7 at UniProt or InterPro

Protein Sequence (1113 amino acids)

>HMPREF1058_RS17825 carboxypeptidase regulatory-like domain-containing protein (Phocaeicola vulgatus CL09T03C04)
MVKRMRSFFAVVMLVIAATVNAQVTTSSMSGKVVDQSNEAIIGATIQAIHEPSGTHYGAI
TNVDGRYSIQGMRAGGPYKVEVSYVGYQSVVYKSINLQLGENYVLDANLKESTELLDEVV
ITASKSSNMKSDRAGAVTNVDAARMSEVPTVSRSMNDIMRLTPQGANIGSGFSVGGGNYR
QSYVTVDGAAFNNAFGIGSNLPAGGSPISLDALEQISVSTTPFDVRQSGFTGGAINAVTK
SGTNEFKGTAYMYTSNTHLTGNKVEDYELTRNRDHSTTYGASLGGAIIKNKLFFFVNGEY
QDNVQAGPSGIARSGANDEWSTNGIVHRPFENTTTVGGRTFVGMNNISQYLSEKYNYNPG
RYQGYSLETPSYKIMGRLDWNINNNNKINFRFTHTHSKYSSNPSSSTTPFKDSIIYPGGV
DGSAGKSSSGRTANAGMYFESSRYMQEQNFTSIASEWNSKWGAINNALRFTYSYQNEPRT
YEGGTFPTVDILDQGSLYASFGPDPFTEGNLRQVKTFVITDEFNFSSGIHNFMGGIQFES
NKAVNGFMQAGSGYYVYSSWDDFVNNRAPAAFGVTYSNTGDGSQFLANMKYQQLSFYLQD
QMNITDNFRLTAGVRFELPIYPELKNNYNKNFAQIDFDGYHYATDQLPSSYQLTASPRIG
FNWDLTGERKYVLRGGSGYFIGRLPFVWLVSAVGNANCGQSTYYYNEQKDAKYGQPSFHT
SVADMLKDPNLNLPAATDPAAPSGATIIDRDLKMNATWKSSLAFDAKLPGDIDFTLEGIF
SKEFNPATVTNLGRKFKGEQEIAPGDVRRMFEYSNANKTDAYYITNAGNSAYYYSLTASL
AKTFDFGLHLSASYTRSYAKSYGDGIGDQVNSAYYNNRYSVNGNNDTETGYGTYVSPNRV
LASAAYRIKYAKNFASSLSLIYEGMNMGYAGGYSAARYSYTFTGNIVGDYGSNNLLYIPA
SREALDKWNFADYTDSKTGEVTYSAKEQRDDFWAYINEDSYLKGRKGKYAERGGAIMPWH
HQLDLKFNQDFFLNVGGKRNTLQFGVDIKNFLNLLNSDWGIYKTVNNTSLLSYKGGAYQF
QKNGGKKLTDTYSNLNSFNSTYSIQFSVRYIFN