Protein Info for HMPREF1058_RS17655 in Phocaeicola vulgatus CL09T03C04

Annotation: AbgT family transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 238 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 60 to 81 (22 residues), see Phobius details amino acids 101 to 122 (22 residues), see Phobius details amino acids 142 to 161 (20 residues), see Phobius details amino acids 182 to 201 (20 residues), see Phobius details amino acids 213 to 231 (19 residues), see Phobius details PF03806: ABG_transport" amino acids 92 to 210 (119 residues), 56.7 bits, see alignment E=7.1e-20

Best Hits

KEGG orthology group: K12942, aminobenzoyl-glutamate transport protein (inferred from 100% identity to bvu:BVU_2715)

Predicted SEED Role

"Aminobenzoyl-glutamate transport protein" in subsystem p-Aminobenzoyl-Glutamate Utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I9A730 at UniProt or InterPro

Protein Sequence (238 amino acids)

>HMPREF1058_RS17655 AbgT family transporter (Phocaeicola vulgatus CL09T03C04)
MKSKYYFPHTATVFFLLTVAVALFSWIGSIYGLGKVQSLLSPEGIRWELRHAMGNFVQTP
ALGIVMMLFLGFGITVHSGVWGTLGRIVKRGKPISRKEKRALILAGCILLVYIIMIICTT
FAPWTMLRSVTGSLTNSPFQKGIYYLISFGVGLSGMAFGYASGRFRDDKDIIKGMSCLFS
RFADYFVALFFIVQFFSSLMYTNLVEWVGIDSYIVSYAFHICCYLPFAWMLNRKKIDC