Protein Info for HMPREF1058_RS17560 in Phocaeicola vulgatus CL09T03C04

Annotation: phage integrase SAM-like domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 351 transmembrane" amino acids 288 to 307 (20 residues), see Phobius details PF17293: Arm-DNA-bind_5" amino acids 9 to 91 (83 residues), 48 bits, see alignment E=1.5e-16 PF13102: Phage_int_SAM_5" amino acids 121 to 204 (84 residues), 44.2 bits, see alignment E=2.1e-15

Best Hits

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I9J9G9 at UniProt or InterPro

Protein Sequence (351 amino acids)

>HMPREF1058_RS17560 phage integrase SAM-like domain-containing protein (Phocaeicola vulgatus CL09T03C04)
MRSTFKLLFYINRNKVRSDGTTAVLCRISIDGKKSAVTTGIYCKPEDWDSTKGEIRTTRE
NNRLAAFRNRLEEAYGNLLRNQGVVTAELLKTTVSGTNSVPEYLLQVGEVERELLRVCSK
EINSTSTYRQSKTTQLNLRQFIESRGMKDIAFSDITEEFAESFKVFLKKELGHRNGHVNH
CLCWLNRLIYIAVDWEVLRANPIEDVAYERKEAPKLRHISRGELKRMMETSLPDPMMELA
RRTFIFSSLTGLAYADTRALHPRVARMPSTTLSRCERKLQKRAKRAMFRSRVAAGMGIST
ALAAFSLKNGIRAIQSEKILATRAACRPSLNLNTRLLVFLSNTDMSLHLVG