Protein Info for HMPREF1058_RS16995 in Phocaeicola vulgatus CL09T03C04

Annotation: DUF4136 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 210 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details PF13590: DUF4136" amino acids 33 to 205 (173 residues), 122.1 bits, see alignment E=1.4e-39

Best Hits

KEGG orthology group: None (inferred from 100% identity to bvu:BVU_2591)

Predicted SEED Role

"FIG00407622: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I9A5F1 at UniProt or InterPro

Protein Sequence (210 amino acids)

>HMPREF1058_RS16995 DUF4136 domain-containing protein (Phocaeicola vulgatus CL09T03C04)
MKKLLFPLFMLAMIVTSCEKDPDMNKLDSDYSVYTDYDNSVHFNEFSTYYLPDSILVPDN
SLKANYWKDENAQNIISAVAHEMEQKGYVQTEDKEKANVGIQLSYAQQRIQMTTGGWYGG
WWDAGFWGPYWGGGWYYPYPVTYSYDTGTLIMEMVDLRQPADKSNQNKLPVIWHAYASGL
LYGNSHFNMQLTLNAVNQAFAQSPYLSNKQ