Protein Info for HMPREF1058_RS16560 in Phocaeicola vulgatus CL09T03C04

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 391 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 52 to 72 (21 residues), see Phobius details amino acids 81 to 99 (19 residues), see Phobius details amino acids 105 to 127 (23 residues), see Phobius details amino acids 139 to 160 (22 residues), see Phobius details amino acids 166 to 188 (23 residues), see Phobius details amino acids 221 to 239 (19 residues), see Phobius details amino acids 251 to 270 (20 residues), see Phobius details amino acids 282 to 298 (17 residues), see Phobius details amino acids 304 to 323 (20 residues), see Phobius details amino acids 343 to 365 (23 residues), see Phobius details amino acids 371 to 388 (18 residues), see Phobius details PF00083: Sugar_tr" amino acids 17 to 192 (176 residues), 31 bits, see alignment E=1.3e-11 PF07690: MFS_1" amino acids 19 to 356 (338 residues), 100.5 bits, see alignment E=9.4e-33

Best Hits

KEGG orthology group: None (inferred from 99% identity to bvu:BVU_2502)

Predicted SEED Role

"Putative transport protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I9UK28 at UniProt or InterPro

Protein Sequence (391 amino acids)

>HMPREF1058_RS16560 MFS transporter (Phocaeicola vulgatus CL09T03C04)
MKQELKENQGLPASLLWTLAIIAGISVANLYYNQPLLNRISRDLQTSEFTANLIAMITQI
GYAIGLLFIIPLGDLFKRKTIILINFTVLVVSLLTIALTPYIHLILFASLLTGICSVMPQ
IFIPIAAQFSTPETKGKNVGMIVSGLLTGILASRVVSGIIGEYLGWRFIFFVAAGMMVIC
VIIIMRVLPDMPCNFKGRYSVLMKSLFSLVMEYPQLRISSLRAGIAFGSFLALWTSLAFK
MEQAPFFAGNNIVGLLGLCGIAGALTASYIGNYVQVLGVKRLNYIGCGLIFAAWFSLYSG
QNSYVGIIIGIFIIDIGMQCIQLSNQTTIFSLNPKAANRINTIFMTTYFIGGSIGTLLAG
IFWHWFGWQGVVGTGITLATCSFMINIFSKK