Protein Info for HMPREF1058_RS16055 in Phocaeicola vulgatus CL09T03C04

Annotation: AAA family ATPase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 538 PF00004: AAA" amino acids 274 to 404 (131 residues), 105 bits, see alignment E=2.1e-34

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I9A3G8 at UniProt or InterPro

Protein Sequence (538 amino acids)

>HMPREF1058_RS16055 AAA family ATPase (Phocaeicola vulgatus CL09T03C04)
MEAIYSKIKDMLKAYYPVLYLTSFEYDRTKQKIEGIINILKSEGKDVRLFNWNCVSGLRD
LNSDKSLPVINKDDEEIVEPEEVLKYILNDKDTSKDVFVLEDFNNYIEEENVKYYIRSIA
ERARHTNTHAIILSAVYKLPVELEKYVTVLNIPLPNRLDMEKTLGVVERQCKINLSVEMR
NRMVDAALGMTSMEADLAFCLAAVKDDLGQNAPYTVSSEKEQIIKKSGILDYFPKNESLK
DVGGMEVLKDWLFKRQKAYEKKARDFGLQEPKGLLLLGVPGCGKSLTAKSIASFWNMPLL
RLDIGKVYQGLVGSSEDNIRKAIATAEAVAPCVLWIDEIEKGLSGVQSSGSTDGGVTSRI
FSTILTWMQEKTSPVFVVATANNINLLPPELLRKGRFDEIFFVDLPSQQERENIFSIHLK
KKGQDPSQYPMEMLGKKTEGFNGAEIEECIKEAMFAAYVEAQDEPKLLSKHLMDAIAKTV
PLSTTMKEQIAVLRNWAATRAKNASSESIAEEKKEMPILLTRPELELERSFDLNTTKE