Protein Info for HMPREF1058_RS15500 in Phocaeicola vulgatus CL09T03C04

Annotation: YgiQ family radical SAM protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 629 PF08497: Radical_SAM_N" amino acids 9 to 327 (319 residues), 429.2 bits, see alignment E=1.3e-132 TIGR03904: uncharacterized radical SAM protein YgiQ" amino acids 9 to 596 (588 residues), 804.4 bits, see alignment E=2.5e-246 PF11842: DUF3362" amino acids 551 to 620 (70 residues), 39.6 bits, see alignment E=9.7e-14

Best Hits

KEGG orthology group: None (inferred from 100% identity to bvu:BVU_2280)

Predicted SEED Role

"putative Fe-S oxidoreductase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I9J6A6 at UniProt or InterPro

Protein Sequence (629 amino acids)

>HMPREF1058_RS15500 YgiQ family radical SAM protein (Phocaeicola vulgatus CL09T03C04)
MKEYKLTDWLPTTKKEVEMRGWNELDVILFSGDAYVDHPSFGPAVIGRLLEAQGLKVAIV
PQPNWRDDLRDFKKLGRPRLFFGVSAGCMDSMVNKYTANKRLRSEDAYTPDGRHDMRPEY
PSIVYTQILKKIYPDVPVILGGIEASLRRVTHYDYWQDCLRKSILIDSGADLLIYGMGEK
PITELCKRMKESKDSQDGAHLPLQKDIPHDIPQTAYLIRKKGSVPSEPSVIECVNEKPDI
ILHSHEACLKDKKKQAENFRFIEEESNKYEASRILQDTGNETVVVNPPYPPMSQGELDHS
FDLPYTRMPHPKYKGKRIPAFDMIKFSVNLHRGCFGGCAFCTISAHQGKFIVSRSKESIL
REVRAITEMPDFKGYLSDLGGPSANMYAMRGKDEKICRRCKRPSCIHPKVCPNLNTDHRP
LLDIYHSVDALPGIKKSFIGSGVRYDLLQYQSKDPAVNRSTAEYTRELIAHHVSGRLKVA
PEHTSDQVLQIMRKPSFSQFYDFKKTFDKINKELNMRQQIIPYFISSHPGCTEEDMAELA
VITKKLDFHLEQVQDFTPTPMTVATETWYTGYHPYTLQPVFSAKTPKEKLAQRMFFFWYK
PEERRAIINELRKIGRADLIDKLYGKYKA